References
- Abbott, C.L., and M.C. Double (2003a), Phylogeography of shy and white-capped albatrosses inferred from mitochondrial DNA sequences: implications for population history and taxonomy, Mol. Ecol. 12, 2747-2758.
- Abbott, C.L., and M.C. Double (2003b), Genetic structure, conservation genetics and evidence of speciation by range expansion in shy and white-capped albatrosses, Mol. Ecol. 12, 2953-2962.
- Aleixo, A. (2002), Molecular systematics and the role of the “Várzea”—“Terra-firme” ecotone in the diversification of Xiphorhynchus woodcreepers (Aves: Dendrocolaptidae), Auk 119, 621-640.
- Aleixo, A., T.C.T Burlamaqui, M.P.C. Schneider, and E.C. Gonçalves (2009), Molecular systematics and plumage evolution in the monotypic obligate army-ant-following genus Skutchia (Thamnophilidae) , Condor 111, 382-387.
- Aliabadian, M., M. Kaboli, R. Prodon, V. Nijman, and M. Vences (2007), Phylogeny of Palaearctic wheatears (genus Oenanthe)—Congruence between morphometric and molecular data, Mol. Phylogenet. Evol. 42, 665-675.
- Allende, L.M., I. Rubio, Valentin Ruiz-del-Valle, J. Guillen, J. Martinez-Laso, E. Lowy, P. Varela, J. Zamora, A. Arnaiz-Villena (2001), The Old World Sparrows (Genus Passer) Phylogeography and Their Relative Abundance of Nuclear mtDNA Pseudogenes, J. Mol. Evol. 53, 144-154.
- Alström, P., P.G.P. Ericson, U. Olsson, and P. Sundberg (2006), Phylogeny and classifcation of the avian superfamily Sylvioidea, Mol. Phylogenet. Evol. 38, 381-397.
- Alström, P., U. Olsson, F. Lee, H. Wang, W. Gao, and P. Sundberg (2008a), Phylogeny and classification of the Old World Emberizini (Aves, Passeriformes), Mol. Phylogenet. Evol. 47:960-973
- Alström, P., P.C. Rasmussen, U. Olsson, and P. Sundberg (2008b), Species delimitation based on multiple criteria: the Spotted Bush Warbler Bradypterus thoracicus complex (Aves: Megaluridae), Zool. J. Linn. Soc. 154, 291-307.
- Alström, P., P. Davidson, J.W. Duckworth, J.C. Eames, T.T. Le, C. Nguyen, U. Olsson, C. Robson and R. Timmins (2010), Description of a new species of Phylloscopus warbler from Vietnam and Laos, Ibis 152, 145-168.
- Altshuler, D.L., R. Dudley, and J.A. McGuire (2004), Resolution of a paradox: Hummingbird flight at high elevation does not come without a cost, Proc. Natl. Acad. Sci. 101, 17731-17736.
- Alvarenga, H.M.F., and E. Höfling (2003), Systematic revision of the Phorusrhacidae (Aves: Ralliformes), Papéis Avulsos de Zoologia 43, 51-91.
- Amaral, F.S.R., M.J. Miller, L.F. Silveira, E. Bermingham, and A. Wajntal (2006), Polyphyly of the hawk genera Leucopternis and Buteogallus (Aves, Accipitridae): multiple habitat shifts during the Neotropical buteonine diversification, BMC Evol. Biol. 6:10.
- Amaral, F.S.R., F.H. Sheldon, A. Gamauf, E. Haring, M. Riesing, L.F. Silveira, and A. Wajntal (2008), Patterns and Processes of Diversification in a Widespread and Ecologically Diverse Avian Group, the Buteonine Hawks (Aves, Accipitridae), Mol. Phylogenet. Evol. 53, 703-715.
- Anciães, M., and A.T. Peterson (2009), Ecological niches and their evolution among Neotropical manakins (Aves: Pipridae), J. Avian Biol. 40, 591-604.
- Arbogast, B.S., S.V. Drovetski, R.L. Curry, P.T. Boag, G. Seutin, P.R. Grant, B.R. Grant, and D.J. Anderson (2006), The Origin and Diversification of Galapagos Mockingbirds, Evolution 60, 370-382.
- Arnaiz-Villena, A., M. Alvarez-Tejado, V. Ruiz-del-Valle, C. Garcia-de-la-Torre, P. Varela, M.J. Recio, S. Ferre, and J. Martinez-Laso (1998), Phylogeny and rapid Northern and Southern Hemisphere speciation of goldfinches during the Miocene and Pliocene Epochs, Cell. Mol. Life Sci. 54, 1031-1041.
- Arnaiz-Villena, A., M. Alvarez-Tejado, V. Ruiz-del-Valle, C. Garcia-de-la-Torre, P. Varela, M.J. Recio, S. Ferre, and J. Martinez-Laso (1999), Rapid Radiation of Canaries (Genus Serinus), Mol. Biol. Evol. 16, 2-11.
- Arnaiz-Villena, A., J. Guillen, V. Ruiz-del-Valle, E. Lowy, J. Zamora, D. Stefani, and L.M. Allende (2001), Phylogeography of crossbills, bullfinches, grosbeaks, and rosefinches, Cell. Mol. Life Sci. 58, 1159-1166.
- Arnaiz-Villena, A., E. Lowy, V. Ruiz-del-Valle, H. Westerdahl, J. Moscoso, J.I. Serrano-Vela, H. Witzell, and J. Zamora (2007a), Evolution of the major histocompatibility complex class I genes in Serinus canaria from the Canary Islands is different from that of Asian and African continental Serinus species, J. Ornithol.148 (Suppl 2):S479-S484.
- Arnaiz-Villena, A., J. Moscoso, V. Ruiz-del-Valle, J. Gonzalez, R. Reguera, M. Wink and J.I. Serrano-Vela (2007b), Bayesian phylogeny of Fringillinae birds: status of the singular African oriole finch Linurgus olivaceus and evolution and heterogeneity of the genus Carpodacus, Acta Zool. Sinica 53, 826-834.
- Arnaiz-Villena, A., J. Moscoso, V. Ruiz-del-Valle, J. Gonzalez, R. Reguera, A. Ferri, M. Wink and J.I. Serrano-Vela (2008), Mitochondrial DNA Phylogenetic Definition of a Group of ‘Arid-Zone’ Carduelini Finches, Open Ornith. J. 1, 1-7.
- Arndt, T. (2006), A revision of the Aratinga mitrata complex, with the description of one new species, two new subspecies and species-level status of Aratinga alticola, J. Ornithol. 147, 73-86.
- Arshad, M., J. Gonzalez, A.A. El-Sayed, T. Osborne, and M. Wink (2009), Phylogeny and phylogeography of critically endangered Gyps species based on nuclear and mitochondrial markers, J. Ornithol. 150, 419-430.
- Astuti, D., N. Azuma, H. Suzuki, and S. Higashi (2006), Phylogenetic Relationships within Parrots (Psittacidae) Inferred from Mitochondrial Cytochrome-b Gene Sequences, Zool. Sci. 23, 191-198.
- Austin, J.J. (1996), Molecular phylogenetics of Puffinus shearwaters: Preliminary evidence from mitochondrial cytochrome b gene sequences, Mol. Phylogenet. Evol. 6, 77-88.
- Austin, J.J., V. Bretagnolle, and E. Pasquet (2004), A global molecular phylogeny of the small puffinus shearwaters and implications for systematics of the little-audubon’s shearwater complex, Auk 121, 847-864.
- Avise, J.C., C.D. Ankney, and W.S. Nelson (1990), Mitochondrial Gene Trees and the Evolutionary Relationship of Mallard and Black Ducks, Evolution 44, 1109-1119.
- Baker, A.J., S.L. Pereira, O.P. Haddrath, and K.-A. Edge (2006), Multiple gene evidence for expansion of extant penguins out of Antarctica due to global cooling, Proc. Royal Soc. B 273, 11-17.
- Baker, A.J., S.L. Pereira, and T.A. Paton (2007), Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds, Biol. Lett. 3, 205-209.
- Baker, A.J., C.M. Miskelly, and O. Haddrath (2010), Species limits and population differentiation in New Zealand snipes (Scolopacidae: Coenocorypha), Conserv. Genet. (forthcoming).
- Banks, J., A. Van Buren, Y. Cherel, and J.B. Whitfield (2006), Genetic evidence for three species of rockhopper penguins, Eudyptes chrysocome, Polar Biol. 30, 61-67.
- Banks, R.C., and M.R. Browning (1995), Comments on the Status of Revived Old Names for some North American Birds, Auk 112, 633-648.
- Baptista, L.F., R. Lawson, E. Visser, and D.A. Bell (1999), Relationships of some mannikins and waxbills in the estrildidae, J. Ornithol. 140, 179-192.
- Barber, B.R., J. E. Martinez-Gomez, and A.T. Peterson (2004), Systematic position of the Socorro mockingbird Mimodes graysoni, J. Avian Biol. 35, 195-198.
- Barhoum, D.N., and K.J. Burns (2002), Phylogenetic Relationships of the Wrentit Based on Mitochondrial Cytochrome b Sequences, Condor 104, 740-749.
- Barker, F.K., and S.M. Lanyon (2000), The impact of parsimony weighting schemes on inferred relationships among toucans and neotropical barbets (Aves: Piciformes), Mol. Phylogenet. Evol. 15, 215-234.
- Barker, F.K. (2004), Monophyly and relationships of wrens (Aves: Troglodytidae): a congruence analysis of heterogeneous mitochondrial and nuclear DNA sequence data, Mol. Phylogenet. Evol. 31, 486-504.
- Barker, F.K. (2007), Avifaunal interchange across the Panamanian isthmus: insights from Campylorhynchus wrens, Biol. J. Linn. Soc. 90, 687-702.
- Barker, F.K., G.F. Barrowclough, and J.G. Groth (2002), A phylogenetic hypothesis for passerine birds: Taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data, Proc. R. Soc. B 269, 295-308.
- Barker, F.K., A. Cibois, P. Schikler, J. Feinstein, and J. Cracraft (2004), Phylogeny and diversification of the largest avian radiation, Proc. Natl. Acad. Sci. 101(30):11040-11045
- Barker, F.K., M.J. Vandergon, and S.M. Lanyon (2008a), Species status of the Red-shouldered Blackbird (Agelaius assimilis): Implications for ecological, morphological, and behaviorial evolution in Agelaius, Auk 125, 87-94.
- Barker, F.K., M.J. Vandergon, and S.M. Lanyon (2008b), Assessment of species limits among yellow-breasted meadowlarks (Sturnella spp.) using mitochondrial and sex-Linked markers, Auk 125, 869-879.
- Barrowclough, G., J.G. Groth, and L.A. Mertz (2005), The RAG-1 exon in the avian order Caprimulgiformes: Phylogeny, heterozygosity, and base composition, Mol. Phylogenet. Evol. 41, 238-248.
- Beddard, F.E. (1898), “The structure and classification of birds”, Longmans and Green, London.
- Beecher, W.J. (1953), A Phylogney of the oscines, Auk 70, 270-333.
- Benkman, C.W., J.W. Smith, P.C. Keenan, T.L. Parchman, and L. Santisteban (2009), A New Species of the Red Crossbill (Fringillidae: Loxia) from Idaho, Condor 111, 169-176.
- Bensch, S., and D. Pearson (2002), The Large-billed Reed Warbler Acrocephalus orinus revisited, Ibis 144, 259-267.
- Benz, B.W., M.B. Robbins, and A.T. Peterson (2006), Evolutionary history of woodpeckers and allies (Aves: Picidae): Placing key taxa on the phylogenetic tree, Mol. Phylogenet. Evol. 40, 389-399.
- Beresford, P. (2003), Molecular systematics of Alethe, Sheppardia and some other African robins (Muscicapoidea), Ostrich 74, 58-73.
- Beresford, P., F.K. Barker, P.G. Ryan, and T.M. Crowe (2005), African endemics span the tree of songbirds (Passeri): Molecular systematics of several evolutionary ‘enigmas’, Proc. R. Soc. B 272, 849-858.
- Bertelli, S. and A.L. Porzecanski (2004), Tinamou (tinamidae) systematics: A preliminary combined analysis of morphology and molecules, Ornitologia Neotropical 15 (Suppl.), 1-8.
- Birks, S.M. and S.V. Edwards (2002), A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences, Mol. Phylogenet. Evol. 23, 408-421.
- Bledsoe, A.H. (1988), Nuclear DNA evolution and Phylogeny of the New World nine-primaried oscines, Auk 105, 504-515.
- Blyth, E. (1875), Catalogue of mammals and birds of Burma, J. Asiatic Soc. Bengal 44 (Part 2. Extra Number), 1-167.
- Bock, W.J. (1994), History and Nomenclature of Avian Family-Group Names, Bull. Amer. Mus. Nat. Hist. #222.
- Böhning-Gaese, K., M.D. Schuda, and A.J. Helbig (2003), Weak phylogenetic effects on ecological niches of Sylvia warblers, J. Evol. Biol. 16, 956-965.
- Böhning-Gaese, K., T. Caprano, K. van Ewijk, and M. Veith (2006), Range Size: Disentangling Current Traits and Phylogenetic and Biogeographic Factors, Amer. Naturalist 167, 555-567.
- Boles, W.E. (2007), Pachycephalidae (Whistlers), in “Handbook of the Birds of the World, volume 12, Picathartes to Tits and Chickadees” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 375-437.
- Bolton, M. (2007), Playback experiments indicate absence of vocal recognition among temporally and geographically separated populations of Madeiran Storm-petrels Oceanodroma castro, Ibis 149, 255-263.
- Bolton, M. A.L. Smith, E. Gomez-Diaz, V.L. Friesen, R. Medeiros, J. Bried, J.L. Roscales, and R.W. Furness (2008), Monteiro's Storm-petrel Oceanodroma monteiroi: a new species from the Azores Ibis 150, 717-727.
- Bonaccorso, E. (2009), Historical biogeography and speciation in the Neotropical highlands: Molecular phylogenetics of the jay genus Cyanolyca, Mol. Phylogenet. Evol. 50, 618-632.
- Bonaccorso, E., and A.T. Peterson (2007), A multilocus phylogeny of New World jay genera, Mol. Phylogenet. Evol. 42, 467-476.
- Bonaccorso, E., A.T. Peterson, A.G. Navarro-Sigüenza, and R.C. Fleischer (2010), Molecular Systematics and Evolution of the Cyanocorax Jays, Mol. Phylogenet. Evol. 54, 897-909.
- Bonaparte, C.L. (1849), “Conspectus Systematis Ornithologiae”, M. Westerman and Fil, Amsterdam.
- Bonaparte, C.L. (1850), “Conspectus Generum Avium”, E.J. Brill, Leyden.
- Bonaparte, C.L. (1854), Conspectus Systematis Ornithologiae, Ann. Sci. Nat. Zool., Series 4, vol. 1, 105-152.
- Boon, W. O. Robinet, N. Rawlence, V. Bretagnolle, J.A. Norman, L. Christidis, and G.K. Chambers (2008), Morphological, behavioural and genetic differentiation within the Horned Parakeet (Eunymphicus cornutus) and its affinities to Cyanoramphus and Prosopeia, Emu 108, 251-260.
- Borowik, O.A., and D.A. McLennan (1999), Phylogenetic patterns of parental care in calidridine sandpipers, Auk 116, 1107-1117.
- Boulet, M., and H.L. Gibbs (2006), Lineage origin and expansion of a Neotropical migrant songbird after recent glaciation events, Mol. Ecol. 15, 2505-2525.
- Bowie, R.C.K., G. Voelker, J. Fjeldså, L. Lens, S.J. Hackett, and T.M. Crowe (2005), Systematics of the olive thrush Turdus olivaceus species complex with reference to the taxonomic status of the endangered Taita thrush T. helleri, J. Avian Biol. 36, 391-404.
- Bowie, R.C.K., J. Fjeldså, and J. Kiure (2009), Multilocus molecular DNA variation in Winifred's Warbler Scepomycter winifredae suggests cryptic speciation and the existence of a threatened species in the Rubeho-Ukaguru Mountains of Tanzania, Ibis 151, 709-719.
- Brambilla, M., S. Vitulano, F. Spina, N. Baccetti, G. Gargallo, E. Fabbri, F. Guidali, and E. Randi (2008), A molecular phylogeny of the Sylvia cantillans complex: Cryptic species within the Mediterranean basin, Mol. Phylogenet. Evol. 48, 461-472.
- Braun, M.J., and C. J. Huddleston (2009), A Molecular Phylogenetic Survey of Caprimulgiform Nightbirds Illustrates the Utility of Non-coding Sequences, Mol. Phylogenet. Evol. 53, 948-960.
- Brelsford, A., and D.E. Irwin (2009), Incipient Speciation Despite Little Assortative Mating: The Yellow-Rumped Warbler Hybrid Zone, Evolution 63, 3050-3060.
- Bretagnolle, V., C. Attié, and E. Pasquet (1998), Cytochrome-b evidence for validity and phylogenetic relationships of Pseudobulweria and Bulweria (Procellariidae), Auk 115, 188-195.
- Bridge, E.S., A.W. Jones, and A.J. Baker (2005), A phylogenetic framework for the terns (Sternini) inferred from mtDNA sequences: implications for taxonomy and plumage evolution, Mol. Phylogenet. Evol. 35, 459-469.
- Brown, D.M., and C.G. Toft (1999), Molecular Systematics and Biogeography of the Cockatoos (Psittaciformes: Cacatuidae), Auk, 116, 141-157.
- Brown, J.W., R.B. Payn, and D.P. Mindell (2007), Nuclear DNA does not reconcile ‘rocks’ and ‘clocks’ in Neoaves: a comment on Ericson et al., Biol. Lett. 3, 257-259.
- Brown, J.W., J.S. Rest, J. Garcia-Moreno, M.D. Sorenson, D.P. Mindell (2008), Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages, BMC Biol. 6:6.
- Browne, R.A., Collins, E., and D.J. Anderson (2008), Genetic Structure of Galápagos Populations of the Yellow Warbler, Condor 110, 549-553.
- Bruce, M. (2003), A brief history of bird classification, in “Handbook of the Birds of the World, volume 8, Broadbills to Tapaculos” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 11-43.
- Brumfield, R.T., and A.P. Capparella (1996), Genetic Differentiation and Taxonomy in the House Wren Species Group, Condor 98, 547-556.
- Brumfield, R.T., J.G. Tello, Z.A. Cheviron, M.D. Carling, N. Crochet, and K.V. Rosenberg (2007), Phylogenetic conservatism and antiquity of a tropical specialization: Army-ant-following in the typical antbirds (Thamnophilidae), Mol. Phylogenet. Evol. 45, 1-13.
- Bull, J. (1974), “Birds of New York State” Cornell University Press, Ithaca, NY.
- Burg, T.M., and J.P. Croxall (2001), Global relationships amongst black-browed and grey-headed albatrosses: analysis of population structure using mitochondrial DNA and microsatellites, Mol. Ecol. 10, 2647-2660.
- Burg, T.M., and J.P. Croxall (2004), Global population structure and taxonomy of the wandering albatross species complex, Mol. Ecol. 13, 2345-2355.
- Burns, K.J. (1997), Molecular systematics of tanagers (Thraupinae): Evolution and biogeography of a diverse radiation of neotropical birds, Mol. Phylogenet. Evol. 8, 334-348.
- Burns, K.J. (1998), Molecular phylogenetics of the genus Piranga: Implications for biogeography and the evolution of morphology and behavior, Auk 115, 621-634.
- Burns, K.J., S.J. Hackett and N.K. Klein (2002), Phylogenetic relationships and morphological diversity in Darwin’s finches and their relatives, Evolution 56, 1240-1252.
- Burns, K.J., S.J. Hackett, S.J. and N.K. Klein (2003), Phylogenetic relationships of Neotropical honeycreepers and the evolution of feeding morphology, J. Avian Biol. 34, 360-370.
- Burns, K.J., and K. Naoki (2004), Molecular phylogenetics and biogeography of Neotropical tanagers in the genus Tangara, Mol. Phylogenet. Evol. 32, 838-854.
- Burns, K.J., and R.A. Racicot (2009), Molecular phylogenetics of a clade of lowland tanagers: implications for avian participation in the great American interchange, Auk, 126, 635-648.
- Caley, K.J. (2007), Fossil birds, in “Handbook of the Birds of the World, volume 12, Picathartes to Tits and Chickadees” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 10--55.
- Cadena, C.D., A.M. Cuervo, and S.M. Lanyon (2004), Phylogenetic relationships of the Red-bellied Grackle (Icteridae: Hypopyrrhus pyrohypogaster) inferred from mitochondrial DNA sequence data, Condor 106, 664-670.
- Cadena, C.D., J. Klicka, and R.E. Ricklefs (2007), Evolutionary differentiation in the Neotropical montane region: Molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae), Mol. Phylogenet. Evol. 44, 993-1016.
- Chambers, G.K. C. Moeke, R. Steel, and J.W.H. Trueman (2009), Phylogenetic analysis of the 24 named albatross taxa based on full mitochondrial cytochrome b DNA sequences, Notornis 56, 82-94.
- Chang, Q., B.-W. Zhang, H. Jin, L.-F. Liu, and K.-Y. Zhou (2003), Phylogenetic relationships among 13 species of herons inferred from mitochondrial 12S r RNA gene sequences, Acta Zool. Sinica 49, 205-210.
- Chaves, A.V., C.L. Clozato, D.R. Lacerda, E.H.R. Sari, and F.R. Santos (2008), Molecular taxonomy of Brazilian tyrant-flycatchers (Passeriformes: Tyrannidae), Mol. Ecol. Resources 8, 1169-1177.
- Chesser, R.T. (2000), Evolution in the High Andes: The Phylogenetics of Muscisaxicola Ground-Tyrants, Mol. Phylogenet. Evol. 15, 369-380.
- Chesser, R.T. (2004), Molecular systematics of New World suboscine birds, Mol. Phylogenet. Evol. 32, 11-24.
- Chesser, R.T. and José ten Have (2007), On the phylogenetic position of the scrub-birds (Passeriformes: Menurae: Atrichornithidae) of Australia, J. Ornithol. 148, 471-476.
- Chesser, R.T., F.K. Barker, and R.T. Brumfield (2007), Fourfold polyphyly of the genus formerly known as Upucerthia, with notes on the systematics and evolution of the avian subfamily Furnariinae, Mol. Phylogenet. Evol. 44, 1320-1332.
- Chesser, R.T., S. Claramunt, E. Derryberry, and R.T. Brumfield (2009), Geocerthia, a new genus of terrestrial ovenbird (Aves: Passeriformes: Furnariidae), Zootaxa 2213, 64-68.
- Christidis, L., R. Schodde, and P.R. Baverstock (1988), Genetic and Morphological Differentiation and Phylogeny in the Australo-Papuan Scrubwrens (Sericornis, Acanthizidae) Auk 105, 616-629.
- Christidis, L., and W.E. Boles (2008), “Systematics and Taxonomy of Australian Birds”, CISRO, Collingwood, Victoria.
- Christidis, L., P.R. Leeton, and M. Westerman (1996), Were bowerbirds part of the New Zealand fauna? Proc. Natl. Acad. Sci. 93, 3898-3901.
- Cibois, A. (2003), Mitochondrial DNA phylogeny of babblers (Timaliidae), Auk 120, 35-54.
- Cibois, A., and J. Cracraft (2004), Assessing the passerine “Tapestry”: phylogenetic relationships of the Muscicapoidea inferred from nuclear DNA sequences Mol. Phylogenet. Evol. 32, 264-273.
- Cibois, A., E. Pasquet, and T.S. Schulenberg (1999), Molecular systematics of the Malagasy babblers (Timaliidae) and Warblers (Sylviidae) based on cytochrome b and 16S rRNA sequences, Mol. Phylogenet. Evol. 13, 581-595.
- Cibois, A., B. Slikas, T.S. Schulenberg, and E. Pasquet (2001), An endemic radiation of Malagasy songbirds is revealed by mitochondrial DNA sequence data, Evolution 55, 1198-1206.
- Cibois, A., M.V. Kalyakin, L.-X. Han, and E. Pasquet (2002), Molecular phylogenetics of babblers (Timaliidae): revaluation of the genera Yuhina and Stachyris, J. Avian Biol. 33, 380-390.
- Cibois, A., J.-C. Thibault, and E. Pasquet (2004), Biogeography of Eastern Polynesian Monarchs (Pomarea): an endemic genus close to extinction, Condor 106, 837-851.
- Cibois, A., J.-C. Thibault, and E. Pasquet (2007), Uniform phenotype conceals double colonization by reed-warblers of a remote Pacific archipelago, J. Biogeogr. 34, 1150-1166.
- Cicero, C., and N.K. Johnson (2001), Higher-Level Phylogeny of New World Vireos (Aves: Vireonidae) Based on Sequences of Multiple Mitochondrial DNA Genes, Mol. Phylogenet. Evol. 20, 27-40.
- Cicero, C., and N.K. Johnson (2002), Phylogeny and Character Evolution in the Empidonax Group of Tyrant Flycatchers (Aves: Tyrannidae): A Test of W. E. Lanyon's Hypothesis Using mtDNA Sequences, Mol. Phylogenet. Evol. 22, 289-392.
- Claramunt, S., E.P. Derryberry, R.T. Chesser, A. Aleixo, and R.T. Brumfield (2010), Polyphyly of Campylorhamphus with the Description of a New Genus for C. pucherani (Dendrocolaptinae) Auk (forthcoming).
- Clarke, J.A., C.P. Tambussi, J.I. Noriega, G.M. Erickson, and R.A. Ketchman (2005), Definitive fossil evidence for the extant avian radiation in the Cretaceous, Nature 433, 305-308.
- Cleere, N., A.W. Kratter, D.W. Steadman, M.J. Braun, C.J. Huddleston, C.E. Filardi, and G. Dutson (2007), A new genus of frogmouth (Podargidae) from the Solomon Islands—results from a taxonomic review of Podargus ocellatus inexpectatus Hartert 1901, Ibis 149, 271-286.
- Clements, J.F. (2000), “Birds of the World: A Checklist (5th ed.)”, Ibis Publishing, Vista, CA.
- Clements, J.F. (2007), “The Clements Checklist of Birds of the World (6th ed.)”, Comstock Publishing (Cornell University Press), Ithaca, NY.
- Clench, M. H. (1985), Body pterylosis of Atrichornis, Menura, the ‘corvid assemblage’ and other possibly related passerines (Aves: Passeriformes), Rec. Australian Museum 37(3), 115-142.
- Coates, B.J., G.C.L. Dutson, and C.E. Filardi (2006), Family Monarchidae (Monarch-Flycatchers), in “Handbook of the Birds of the World, volume 11, Old World Flycatchers to Old World Warblers”, (del Hoyo, J., A. Elliott, and D. Christie, eds.) Lynx Edicions, Barcelona, pp. 244-329.
- Collar, N.J., and C. Robson (2007), Family Timaliidae (Babblers) in “Handbook of the Birds of the World, volume 12, Picathartes to Tits and Chickadees” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 70-291.
- Collar, N.J., C. Dingle, M.N. Gabremichael, and C.N. Spottiswoode (2009), Taxonomic status of the Degodi Lark Mirafra degodiensis, with notes on the voice of Gillett's Lark M. gilletti, Bull. Brit. Ornith. Club 129, 49-62.
- Cox. W.A., R.T. Kimball, and E.L. Braun (2007), Phylogenetic position of the New World quail (Odontophoridae): eight nuclear loci and three mitochondrial regions contradict morphology and the Sibley-Ahlquist tapestry, Auk 124, 71-84.
- Cooper, A., and D. Penny (1997), Mass survival of birds across the Cretaceous/Tertiary boundary, Science 275, 1109-1113.
- Cracraft, J. and J. Feinstein (2000), What is not a bird of paradise? Molecular and morphological evidence places Macgregoria in the Meliphagidae and the Cnemophilinae near the base of the corvoid tree, Proc. R. Soc. B. 267, 233-241.
- Cracraft, J. (2001), Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event, Proc. R. Soc. B 268, 459-469.
- Cracraft, J., F.K. Barker, and A. Cibois (2003), Avian higher-level phylogenetics and the Howard and Moore Checklist of Birds, in “The Howard and Moore Complete Checklist of the Birds of the World (3rd ed.)”, (E. Dickinson et al., eds.), Princeton University Press, Princeton, NJ.
- Cracraft, J., F.K. Barker, M. Braun, J. Harshman, G.J. Dyke, J. Feinstein, S. Stanley, A. Cibois, P. Schikler, P. Beresford, J. Garcia-Moreno, M.D. Sorenson, T. Yuri, And D.P. Mindell (2004), Phylogenetic relationships among modern birds (Neornithes): toward an avian tree of life. in “Assembling the Tree of Life” (Cracraft, J., and Donoghue, M. J., eds.), Oxford University Press, Oxford.
- Crochet, P.-A., F. Bonhomme, and J.-D. LeBreton (2000), Molecular phylogeny and plumage evolution in gulls (Larini), J. Evol. Biol. 13, 47-57.
- Crochet, P.-A., F. Bonhomme, and J.-D. LeBreton (2002), Systematics of large white-headed gulls: Patterns of mitochondrial DNA variation in western European taxa, Auk 119, 603-620.
- Crowe, T.M., E.H. Harley, M.B. Jakutowic, J. Komen, and A.A. Crowe (1992), Phylogenetic, taxonomic and biogeographical implications of genetic, morphological, and behavioral variation in Francolins (Phasianidae: Francolinus), Auk 109, 24-42.
- Crowe, T.M., R.C.K. Bowie, P. Bloomer, T.G. Mandiwana, T.A.J. Hedderson, E. Randi, S. Pereira, and J. Wakeling (2006a), Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): Effects of character exclusion, data partitioning and missing data, Cladistics 22, 495-532.
- Crowe, T.M., P. Bloomer, E. Randi, V. Lucchini, R. Kimball, E. Braun, and J.G. Groth (2006b), Supra-generic cladistics of landfowl (Order Galliformes), Acta Zool. Sinica 52, S358-S361.
- Curson, J., D. Quinn, and D. Beadle (1994), “Warblers of the Americas: An Identification Guide”, Houghton-Mifflin, Boston.
- daCosta, J.M., and J. Klicka (2008), The Great American Interchange in birds: A perspective with the genus Trogon, Mol. Ecol. 17, 1328-1343.
- DaCosta, J.M., W. Wehtje, and J. Klicka (2008), Historic genetic structuring and paraphyly within the great-tailed grackle, Condor 110, 170-177 .
- DaCosta, J.M., G.M. Spellman, P. Escalante, and J. Klicka (2009), A molecular systematic revision of two historically problematic songbird clades: Aimophila and Pipilo, J. Avian Biol. 40, 206-216.
- Dávalos, L.M., and A.L. Porzecanski (2009), Accounting for molecular stochasticity in systematic revisions: species limits and phylogeny of Paroaria, Mol. Phylogenet. Evol. 53, 234-248.
- de Kloet, R.S. and S.R. de Kloet (2005), The evolution of the spindlin gene in birds: Sequence analysis of an intron of the spindlin W and Z gene reveals four major divisions of the Psittaciformes, Mol. Phylogenet. Evol. 36:706--721.
- de Knijff, P., F. Denkers, N.D. van Swelm, and M. Kuiper (2001), Genetic Affinities Within the Herring Gull Larus argentatus Assemblage Revealed by AFLP Genotyping, J. Mol. Evol. 52, 85-93.
- del Hoyo, J., A. Elliott, and J. Sargatal (eds.) (1992), “Handbook of the Birds of the World, volume 1, Ostrich to Dodos”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and J. Sargatal (eds.) (1996), “Handbook of the Birds of the World, volume 3, Hoatzin to Auks”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and J. Sargatal (eds.) (1997), “Handbook of the Birds of the World, volume 4, Sandgrouse to Cuckoos”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and J. Sargatal (eds.) (1999), “Handbook of the Birds of the World, volume 5, Barn-owls to Hummingbirds”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and J. Sargatal (eds.) (2001), “Handbook of the Birds of the World, volume 6, Mousebirds to Hornbills”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and J. Sargatal (eds.) (2002), “Handbook of the Birds of the World, volume 7, Jacamars to Woodpeckers”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2003), “Handbook of the Birds of the World, volume 8, Broadbills to Tapaculos”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2004), “Handbook of the Birds of the World, volume 9, Cotingas to Pipits and Wagtails”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2005), “Handbook of the Birds of the World, volume 10, Cuckoo-shrikes to Thrushes”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2006), “Handbook of the Birds of the World, volume 11, Old World Flycatchers to Old World Warblers”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2007), “Handbook of the Birds of the World, volume 12, Picathartes to Tits and Chickadees”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2008), “Handbook of the Birds of the World, volume 13, Penduline-tits to Shrikes”, Lynx Edicions, Barcelona.
- del Hoyo, J., A. Elliott, and D. Christie (eds.) (2009), “Handbook of the Birds of the World, volume 14, Bush-shrikes to Old World Sparrows”, Lynx Edicions, Barcelona.
- Delaney, K.S., S. Zafar and R.K. Wayne (2008), Genetic Divergence and Differentiation within the Western Scrub-Jay (Aphelocoma californica), Auk 125, 839-849.
- Delport, W., A.C. Kemp, and J.W.H. Ferguson JWH (2004), The structure of an African Redbilled Hornbill hybrid zone as revealed by morphological, behavioral and breeding biology data, Auk 121, 565-586.
- D'Horta, F.M., J.M.C. da Silva, and C.C. Ribas (2008), Species limits and hybridization zones in Icterus cayanensis-chrysocephalus group (Aves: Icteridae), Biol. J. Linn. Soc. 95, 583-597.
- Diamond, J.M., M.E. Gilpin, and E. Mayr (1976), Species-distance relation for birds in the Solomon Archipelago, and the paradox of the great speciators, Proc. Natl. Acad. Sci. 73, 2160-2164.
- Dickinson, E., et.al. (2003), “The Howard and Moore Complete Checklist of the Birds of the World (3rd ed.)”, Princeton University Press, Princeton, NJ.
- Dingle, C., I.J. Lovette, C. Canaday, and T.B. Smith (2006), Elevational Zonation and the Phylogenetic Relationships of the Henicorhina Wood-Wrens, Auk 123, 119-134.
- Driskell, A. and L. Christidis (2004), Phylogeny and evolution of the Australo-Papuan honeyeaters (Passeriformes: Meliphagidae), Mol. Phylogenet. Evol. 31, 943-960.
- Driskell, A., L. Christidis, B.J. Gill, W.E. Boles, F.K. Barker, and N.W. Longmore (2007), A new endemic family of New Zealand passerine birds: adding heat to a biodiversity hotspot, Australian J. Zool. 55, 73-78.
- Drovetski, S.V., R.M. Zink, S. Rohwer, I.V. Fadeev, E.V. Nesterov, I. Karagodin, E.A. Koblik, and Y.A. Red'kin (2004), Complex biogeographic history of a Holarctic passerine , Proc. Royal Soc. B 271, 545-551.
- Drovetski, S.V., R.M. Zink, and N.A. Mode (2009), Patchy distributions belie morphological and genetic homogeneity in rosy-finches, Mol. Phylogenet. Evol., 50, 437-445.
- Donne-Goussé, C., V. Laudet, C. Hanni (2002), A molecular phylogeny of Anseriformes based on mitochondrial DNA analysis, Mol. Phylogenet. Evol. 23, 339-356.
- Dor, R., R.J. Safran, F.H. Sheldon, D.W. Winkler, and I.J. Lovette (2010), Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex, Mol. Phylogenet. Evol. (forthcoming).
- Double, M., and S. Murphy (2002), “Genetic variation within and among populations of North Island kokako”, Science & Research Internal Report #176, New Zealand Department of Conservation.
- Dumbacher, J.P., B.M. Beehler, T.F. Spande, H.M. Garraffo, and J.W. Daly (1992), Homobatrachotoxin in the genus Pitohui: Chemical defense in birds? Science 258, 799-801.
- Dumbacher, J.P., T.F. Spande, and J.W. Daly (2000), Batrachotoxin alkaloids from passerine birds: A second toxic bird genus (Ifrita kowaldi) from New Guinea, Proc. Natl. Acad. Sci. 97(24), 12970-12975.
- Dumbacher, J.P., K. Deiner, L. Thompson, and R.C. Fleischer (2008), Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds Mol. Phylogenet. Evol. 49, 774-781.
- Dutson, G. (2008), A new species of White-eye Zosterops and notes on other birds from Vanikoro, Solomon Islands, Ibis 150, 698-706.
- Eberhard, J.R., and E. Bermingham (2004), Phylogeny and biogeography of the Amazona ochrocephala (Aves: Psittacidae) complex, Auk 121, 318-332.
- Efe, M.A., E.S. Tavares, A.J. Baker, S.L. Bonatto (2009), Multigene phylogeny and DNA barcoding indicate that the Sandwich tern complex (Thalasseus sandvicensis, Laridae, Sternini) comprises two species Mol. Phylogenet. Evol. 52, 263-267.
- Ekman, J., and P.G.P. Ericson (2006), Out of Gondwanaland; the evolutionary history of cooperative breeding and social behaviour among crows, magpies, jays and allies, Proc. R. Soc. B 273, 1117-1125.
- Elliott, A., J. Sargatal, and J. del Hoyo (eds.) (1994), “Handbook of the Birds of the World, volume 2, New World Vultures to Guineafowl”, Lynx Edicions, Barcelona.
- Eo, S.H., O.R.P. Bininda-Emonds, and J.P. Carroll (2009), A phylogenetic supertree of the fowls (Galloanserae, Aves) Zool. Scripta 38, 465-481.
- Ericson, P.G.P. (1997), Systematic relationships of the paleogene family Presbyornithidae (Aves: Anseriformes), Zool. J. Linn. Soc. 121, 429-483.
- Ericson, P.G.P., U.S. Johansson, T.J. Parsons (2000), Major divisions of oscines revealed by insertions in the nuclear gene c-myc: a novel gene in avian phylogenetics, Auk 117, 1077-1086.
- Ericson, P.G.P., L. Christidis, A. Cooper, M. Irestedt, J. Jackson, U.S. Johansson, and J.A. Norman (2002a), A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens, Proc. R. Soc. B 269, 235-241.
- Ericson, P.G.P., L. Christidis, M. Irestedt, and J.A. Norman (2002b), Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds, Mol. Phylogenet. Evol. 25, 53-62.
- Ericson, P.G.P., I.Envall, M. Irestadt, and J.A. Norman (2003), Inter-familial relationships of the shorebirds (Aves: Charadriiformes) based on nuclear DNA sequence data, BMC Evol. Biol. 3:16.
- Ericson, P.G.P., and U.S. Johansson (2003), Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data, Mol. Phylogenet. Evol. 29, 126-138.
- Ericson, P.G.P., A.-L. Jansén, U.S. Johansson, and J. Ekman (2005), Inter-generic relationships of the crows, jays, magpies and allied groups (Aves: Corvidae) based on nucleotide sequence data, J. Avian Biol., 36, 222-234.
- Ericson, P.G.P., C.L. Anderson, T. Britton, A. Elzanowski, U. S. Johansson, M. Kallersjo, J.I. Ohlson, T.J. Parsons, D. Zuccon, and G. Mayr (2006a), Diversification of Neoaves: Integration of molecular sequence data and fossils, Biol. Lett. 2, 543-547.
- Ericson, P.G.P., D. Zuccon, U.S. Johansson, H. Alvarenga, and R.O. Prum (2006b), Higher-level phylogeny and morphological evolution of tyrant flycatchers, cotingas, manakins, and their allies (Aves: Tyrannida), Mol. Phylogenet. Evol. 40, 471-483.
- Ericson, P.G.P., S.L. Olson, M. Irestedt, H. Alvarenga, and J. Fjeldså (2010), Circumscription of a monophyletic family for the tapaculos (Aves: Rhinocryptidae): Psiloramphus in and Melanopareia out, J. Ornithol. (forthcoming).
- Escalante, P., L. Márquez-Valdelamar, P. de la Torre, J.P. Laclette, and J. Klicka (2009), Evolutionary history of a prominent North American warbler clade : The Oporornis-Geothlypis complex, Mol. Phylogenet. Evol. 53, 668-678.
- Ewen, J.G., I. Flux, and P.G.P. Ericson (2006), Systematic affinities of two enigmatic New Zealand passerines of high conservation priority, the hihi or stitchbird Notiomystis cincta and the kokako Callaeas cinerea, Mol. Phylogenet. Evol. 40, 281-284.
- Fain, M.G., and P. Houde (2004), Parallel radiations in the primary clades of birds, Evolution 58(11), 2558-2573.
- Fain, M.G., and P. Houde (2007), Multilocus perspectives on the monophyly and phylogeny of the order Charadriiformes, BMC Evol. Biol. 7:35.
- Feare, C., and A. Craig (1998), “Starlings and Mynas”, Christopher Helm, London.
- Feldman, C.R., and K.E. Omland (2004), Phylogenetics of the common raven complex (Corvus corvidae) and the utility of ND4, COI and intron 7 of the β-fibrinogen gene in avian molecular systematics, Zool. Scripta 34, 145-156.
- Ferguson-Lees, J. and D.A. Christie (2001), “Raptors of the World”, Houghton Mifflin, Boston.
- Filardi, C.E., and R.G. Moyle (2005), Single origin of a pan-Pacific bird group and upstream colonization of Australasia, Nature 438, 216-219.
- Filardi, C.E., and Smith, C.E. (2005), Molecular phylogenetics of monarch flycatchers (genus Monarcha) with emphasis on Solomon Island endemics, Mol. Phylogenet. Evol. 37, 776-788.
- Fitzpatrick, J.W. (2004), Family Tyrannidae (Tyrant-Flycatchers), in “Handbook of the Birds of the World, volume 9, Cotingas to Pipits and Wagtails” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 170-462.
- Fitzpatrick, J.W. (2004), Description of a new tribe of fluvicoline flycatchers, in “Handbook of the Birds of the World, volume 9, Cotingas to Pipits and Wagtails” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 25-27.
- Fjeldså, J., D. Zuccon, M. Irestedt, U.S. Johansson, and P.G.P. Ericson (2003), Sapayoa aenigma: a New World representative of ‘Old World suboscines’, Proc. R. Soc. Lond. B (Suppl.) 270:S238-S241.
- Fjeldså, J., M. Irestedt, and P.G.P. Ericson (2005), Molecular data reveal some major adaptational shifts in the early evolution of the most diverse avian family, the Furnariidae, J. Ornithol. 146, 1-13.
- Fjeldså, J., M. Irestedt, K.A. Jønsson, J.I. Ohlson, and P.G.P. Ericson (2007), Phylogeny of the ovenbird genus Upucerthia: a case of independent adaptations for terrestrial life, Zool. Scripta 36, 133-141.
- Fleischer, R.C., C.L. Tarr, H.E. James, B. Slikas, and C.E. Mcintosh (2001), Phylogenetic placement of the Po`ouli, Melamprosops phaeosoma, based on mitochondrial DNA sequence and osteological characters Studies Avian Biology 22, 98-103.
- Fleischer, R.C., B. Slikas, J. Beadell, C. Atkins, C.E. Mcintosh, and S. Conant (2007), Genetic Variability and Taxonomic Status of the Nihoa and Laysan Millerbirds , Condor 109, 954-962.
- Fleischer, R., H. James, and S. Olson (2008), Convergent Evolution of Hawaiian and Australo-Pacific Honeyeaters from Distant Songbird Ancestors, Current Biology, 18, 1927-1931.
- Fregin, S., M. Haase, U. Olsson, and P. Alström (2009), Multi-locus phylogeny of the family Acrocephalidae (Aves: Passeriformes) — the traditional taxonomy overthrown Mol. Phylogenet. Evol. 52, 866-878.
- Friesen, V.L., D.J. Anderson, T.E. Steeves, H. Jones, and E.A. Schreiber (2002), Molecular Support for Species Status of the Nazca Booby (Sula granti), Auk 119, 820-826.
- Friesen, V.L., A.L. Smith, E. Gómez-Diaz, M. Bolton, R.W. Furness, J. González-Solis, and L.R. Monteiro (2007), Sympatric speciation by allochrony in a seabird, Proc. Natl. Acad. Sci. 104, 18589-18594.
- Fuchs, J., R.C.K. Bowie, J. Fjeldså, and E. Pasquet (2004), Phylogenetic relationships of the African bush-shrikes and helmet-shrikes (Passeriformes: Malaconotidae), Mol. Phylogenet. Evol. 33, 428-439.
- Fuchs, J., J. Fjeldså, R.C.K. Bowie, G. Voelker, and E. Pasquet (2006a), The African warbler genus Hyliota as a lost lineage in the Oscine songbird tree: molecular support for an African origin of the Passerida, Mol. Phylogenet. Evol. 39, 186-197.
- Fuchs, J., J. Fjeldså, and E. Pasquet (2006b), An ancient African radiation of corvoid birds (Aves: Passeriformes) detected by mitochondrial and nuclear sequence data, Zoo. Scripta 35, 375-385.
- Fuchs, J., J.I. Ohlson, P.G.P. Ericson, and E. Pasquet (2006c), Molecular phylogeny and biogeographic history of the piculets (Piciformes: Picumninae), J. Avian Biol. 37, 487-496.
- Fuchs, J., C. Cruaud, A. Couloux, and E. Pasquet (2007a), Complex bio-geographic history of the cuckoo-shrikes and allies (Passeriformes: Campephagidae) revealed by mitochondrial and nuclear sequence data, Mol. Phylogenet. Evol. 44, 138-153.
- Fuchs, J., J.I. Ohlson, P.G.P Ericson, and E. Pasquet (2007b), Synchronous intercontinental splits between assemblages of woodpeckers suggested by molecular data, Zool. Scripta 36, 11-25.
- Fuchs, J., J.-M. Pons, P.G.P. Ericson, C. Bonillo, A. Couloux, and E. Pasquet (2008a), Molecular support for a rapid cladogenesis of the woodpecker clade Malarpicini, with further insights into the genus Picus (Piciformes: Picinae), Mol. Phylogenet. Evol. 34, 34-46.
- Fuchs, J., J.-M. Pons, S.M. Goodman, V. Bretagnolle, M. Melo, R.C.K. Bowie, D. Currie, R. Safford, M.Z. Virani, S. Thomsett, A. Hija, C. Cruaud, and E. Pasquet (2008b), Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna, BMC Evol. Biol. 8:197.
- Fuchs, J., E. Pasquet, A. Couloux, J. Fjeldså, and R.C.K. Bowie (2009), A new Indo-Malayan member of the Stenostiridae (Aves: Passeriformes) revealed by multi-locus sequence data: biogeographical implications for a morphologically diverse clade of flycatchers, Mol. Phylogenet. Evol. 53, 384-393.
- Gamauf, A., and E. Haring (2004), Molecular phylogeny and biogeography of Honey-buzzards (genera Pernis and Henicopernis), J. Zool. Syst. Evol. Res. 42, 145-153.
- Gamauf, A., J.-O. Gjershaug, N. Røv, K. Kvaløy, and E. Haring (2005), Species or subspecies? The dilemma of taxonomic ranking of some South-East Asian hawk-eagles (genus Spizaetus), Bird Conserv. Internat. 15, 99-117.
- García-Deras, G.M., N. Corteés-Rodríguez, M. Hone, A. G. Navarro-Sigüenza, J. Garcíia-Moreno, and B.E. Hernández-Baños (2008), Phylogenetic relationships within the genus Cynanthus (Aves: Trochilidae), with emphasis on C. doubledayi, Zootaxa 1742, 61-68.
- García-Moreno, J., and P. Arctander (1998), Pre-pleistocene differentiation among chat-tyrants, Condor 100, 629-640.
- García-Moreno, J., and J. Fjeldså (1999), Re-evaluation of species limits in the genus Atlapetes based on mtDNA sequence data, Ibis 141, 199-207.
- García-Moreno, J., P. Arctander, and J. Fjeldså (1999b), A Case of Rapid Diversification in the Neotropics: Phylogenetic Relationships among Cranioleuca Spinetails (Aves, Furnariidae), Mol. Phylogenet. Evol. 12, 273-281.
- García-Moreno, J., J. Ohlson, and J. Fjeldså (2001), MtDNA Sequences Support Monophyly of Hemispingus Tanagers, Mol. Phylogenet. Evol. 21, 424-435.
- García-Moreno, J., A.G. Navarro-Sigüenza, A.T. Peterson, and L.A. Sánchez-González (2004), Genetic variation coincides with geographic structure in the common bush-tanager (Chlorospingus ophthalmicus) complex from Mexico, Mol. Phylogenet. Evol. 33, 186-196.
- García-Moreno, J., N. Cortés, G.M. García-Deras, and B.E. Hernández-Baños (2006), Local origin and diversification among Lampornis hummingbirds: A Mesoamerican taxon, Mol. Phylogenet. Evol. 38, 488-498.
- García-Trejo, E.A., A.E. Monteros, M. Coro Arizmendi, and A.G. Navarro-Sigüenza (2009), Molecular Systematics of the Red-bellied and Golden-fronted Woodpeckers, Condor 111, 442-452.
- Gardner, J.L., J.W.H. Trueman, D. Ebert, L. Joseph, and R.D. Magrath (2010), Phylogeny and evolution of the Meliphagoidea, the largest radiation of Australasian songbirds, Mol. Phylogenet. Evol. (forthcoming).
- Garrod, A.H. (1873), On certain muscles of the thigh of birds and on their value in classification, Proceedings of the Zoological Society of London 1873, 626-644.
- Garrod, A.H. (1874), On certain muscles of the thigh of birds and on their value in classification, Part II, Proceedings of the Zoological Society of London 1874, 111-124.
- Gaskin, C., and K. Baird (2005), Observations of black and white storm petrels in the Hauraki Gulf, November 2003 - June 2005: Were they of New Zealand storm petrels? Notornis 52, 181-194.
- Gay, L., D.A. Bell, and P.-A. Crochet (2005), Additional Data on Mitochondrial DNA of North American Large Gull Taxa, Auk 122, 684-688.
- Gelang, M., A. Cibois, E. Pasquet, U. Olsson, P. Alström and P.G.P. Ericson (2009), Phylogeny of babblers (Aves, Passeriformes): major lineages, family limits and classification, Zool. Scripta 38, 225-236.
- Gibb, G.C., O. Kardailsky, R.T. Kimball, E.L. Braun, and D. Penny (2007), Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations, Molecular Biology Evolution 24, 269-280.
- Gill, F.B. (1995), “Ornithology (2nd ed.)”, W. H. Freeman, New York.
- Gill, F.B., F.J. Stokes and C. Stokes (1973), Contact Zones and Hybridization in the Jamaican Hummingbird, Trochilus polytmus (L.), Condor 75, 170-176.
- Gill, F.B., B. Slikas, and F.H. Sheldon (2005), Phylogeny of titmice (Paridae): II. Species relationships based on sequences of the mitochondrial cytochrome-b gene, Auk 122, 121-143.
- Gjershaug, J.O., H.R.L. Lerner, and O.H. Diserud (2009), Taxonomy and distribution of the Pygmy Eagle Aquila (Hieraaetus) weiskei (Accipitriformes: Accipitridae), Zootaxa 2326, 24-38.
- Gómez-Díaz, E., J. González-Solís, M.A. Peinado, and R.D.M. Page (2006), Phylogeography of the Calonectris shearwaters using molecular and morphometric data, Mol. Phylogenet. Evol. 41, 322-332.
- Gonzalez, J., and M. Wink (2008), Phylogenetic position of the monotypic Des Murs' Wiretail (Sylviorthorhynchus desmursii, Aves: Furnariidae) based on mitochondrial and nuclear DNA, J. Ornithol. 149, 393-398.
- Gonzalez, J., G. Delgado Castro, E. Garcia-del-Rey, C. Berger, and M. Wink (2009a), Use of mitochondrial and nuclear genes to infer the origin of two endemic pigeons from the Canary Islands, J. Ornithol. 150, 357-367.
- Gonzalez, J., H. Düttmannand M. Wink (2009b), Phylogenetic relationships based on two mitochondrial genes and hybridization patterns in Anatidae, J. Zool. 279, 310-318.
- Grant, P.R., and B.R. Grant (2008), “How and Why Species Multiply: The Radiation of Darwin's Finches”, Princeton University Press, Princeton, NJ.
- Griffiths, C.S. (1999), Phylogeny of the falconidae inferred from molecular and morphological data, Auk 116, 116-130.
- Griffiths, C.S., G.F. Barrowclough, J.G. Groth and L.A. Mertz (2004), Phylogeny of the Falconidae (Aves): a comparison of the efficacy of morphological, mitochondrial, and nuclear data, Mol. Phylogenet. Evol. 32, 101-109.
- Griffiths, C.S., G.F. Barrowclough, J.G. Groth and L.A. Mertz (2007), Phylogeny, diversity, and classification of the Accipitridae based on DNA sequences of the RAG-1 exon, J. Avian Biol. 38, 587-602.
- Groenenberg, D.S.J., A.J. Beintema, R.W.R.J. Dekker, and E. Gittenberger (2008), Ancient DNA Elucidates the Controversy about the Flightless Island Hens (Gallinula sp.) of Tristan da Cunha, PLoS ONE 3, e1835.
- Groombridge, J.J., C.G. Jones, R.A. Nichols, M. Carlton, and M.W. Bruford (2004), Molecular phylogeny and morphological change in the Psittacula parakeets, Mol. Phylogenet. Evol. 31, 96-108.
- Groth, J.G. (1998), Molecular phylogenetics of Finches and Sparrows: Consequences of character state removal in Cytochrome b sequences, Mol. Phylogenet. Evol. 10, 377-390.
- Groth, J.G. (2000), Molecular evidence for the systematic position of Urocynchramus pylzowi, Auk 117, 787-791.
- Groth, J.G and G.F. Barrowclough (1999), Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene, Mol. Phylogenet. Evol. 12, 115-123.
- Guillaumet, A., P.-A. Crochet, and B. Godelle (2005), Phenotypic variation in Galerida larks in Morocco: the role of history and natural selection, Mol. Ecol. 14, 3809-3821.
- Guillaumet, A., J.-M. Pons, B. Godelle, and P.-A. Crochet (2006), History of the Crested Lark in the Mediterranean region as revealed by mtDNA sequences and morphology, Mol. Phylogenet. Evol. 30, 645-656.
- Guillaumet, A., P.-A. Crochet and J.-M. Pons (2008), Climate-driven diversification in two widespread Galerida larks, BMC Evol. Biol. 8:32.
- Hackett, S.J., R.T. Kimball, S. Reddy, R.C.K. Bowie, E.L. Braun, M.J. Braun, J.L. Chojnowski, W.A. Cox, K-L. Han, J. Harshman, C.J. Huddleston, B.D. Marks, K.J. Miglia, W.S. Moore, F.H. Sheldon, D.W. Steadman, C.C. Witt, and T. Yuri (2008), A phylogenetic study of birds reveals their evolutionary history, Science 320, 1763-1767
- Haddrath, O. and A.J. Baker (2001), Complete mitochondrial DNA genome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis, Proc. Biol. Sci. 268, 939-945.
- Hall, K.S.S. (2005), Do nine-primaried passerines have nine or ten primary feathers? The evolution of a concept, J. Ornithol. 146, 121-126.
- Han, K.-L. (2006), &dquo;Molecular Systematics of Nightjars and Nighthawks (Caprimulgidae)”, M.S. thesis, University of Maryland.
- Han, K.-L., M.B. Robbins, and M.J. Braun (2010), A Multi-gene Estimate of Phylogeny in the Nightjars and Nighthawks (Caprimulgidae), Mol. Phylogenet. Evol. (forthcoming).
- Haring, E. K. Kvaløy, J.-O. Gjershaug, N. Røv, and A. Gamauf (2007), Convergent evolution and paraphyly of the hawk-eagles of the genus Spizaetus (Aves, Accipitridae)—phylogenetic analyses based on mitochondrial markers, J. Zool. Syst. Evol. Res. 45, 353-365.
- Harshman, J., E.L. Braun, M.J. Braun, C.J. Huddleston, R.C.K. Bowie, J.L. Chojnowski, S.J. Hackett, K.-L. Han, R.T. Kimball, B.D. Marks, K.J. Miglia, W.S. Moore, S. Reddy, F.H. Sheldon, D.W. Steadman, S.J. Steppan, C.C. Witt, and T. Yuri (2008), Phylogenomic evidence for multiple losses of flight in ratite birds, Proc. Natl. Acad. Sci., 105, 13462-13467.
- Hedges, S.B., and C.M. Sibley (1994), Molecules vs. morphology in avian evolution: The case of the “pelecaniform” birds, Proc. Natl. Acad. Sci. 91, 9861-9865.
- Helbig, A.J., and I. Seibold (1999), Molecular phylogeny of palearctic-African Acrocephalus and Hippolais warblers (Aves: Sylviidae), Mol. Phylogenet. Evol. 11, 246-260.
- Helbig, A.J., A. Kocum, I. Seibold, and M.J. Braun (2005), A multi-gene phylogeny of aquiline eagles (Aves: Accipitriformes) reveals extensive paraphyly at the genus level, Mol. Phylogenet. Evol. 35, 147-164.
- Hellmayr, C.E. (1938), “Catalogue of birds of the Americas and the adjacent islands in Field Museum of Natural History, Part 11, Ploceidae-Catamblyrhynchidae-Fringillidae”, Field Museum of Natural History, Chicago.
- Herzog, S.K., and J. Mazur Barnett (2004), On the Validity and Confused Identity of Serpophaga griseiceps Berlioz 1959 (Tyrannidae), Auk 121, 415-421.
- Hilty, S. (2003), “Birds of Venezuela”, Princeton University Press, Princeton, NJ.
- Hilty, S.L., and W.L. Brown (1986), “A Guide to the Birds of Colombia”, Princeton University Press, Princeton, NJ.
- Hilty, S.L., and D. Ascanio (2009), A New Species of Spinetail (Furnariidae: Synallaxis) from the Río Orinoco of Venezuela, Auk 126, 485-492.
- Howell, Steve N.G., and S. Webb (1995), “A Guide to the Birds of Mexico and Northern Central America”, Oxford University Press, Oxford.
- Hunt, J.S., E. Bermingham, and R.E. Ricklefs (2001), Molecular Systematics and Biogeography of Antillean Thrashers, Tremblers, and Mockingbirds (Aves: Mimidae) Auk 118, 35-55.
- Huxley, T.H. (1867), On the classification of birds; and on the taxonomic value of the modifications of certain of the cranial bones observable in that class, Proceedings of the Zoological Society of London 1867, 415-472.
- Illera, J.C., D.S. Richardson, B. Helm, J.C. Atienza, and B.C. Emerson (2008), Phylogenetic relationships, biogeography and speciation in the avian genus Saxicola, Mol. Phylogenet. Evol. 48, 1145-1154.
- Irestedt, M., U.S. Johansson, T.J. Parsons, and P.G.P. Ericson (2001), Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data J. Avian Biol. 32, 15-25.
- Irestedt, M., J. Fjeldså, U.S. Johansson, and P.G.P. Ericson (2002), Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes), Mol. Phylogenet. Evol. 23, 499-512.
- Irestedt, M., J. Fjeldså, and P.G.P. Ericson (2004a), Phylogenetic relationships of woodcreepers (Aves: Dendrocolaptinae)—incongruence between molecular and morphological data, J. Avian Biol. 35, 280-288.
- Irestedt, M., J. Fjeldså, J.A.A. Nylander and P.G.P. Ericson (2004b), Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors, BMC Evol. Biol. 4:23.
- Irestedt, M., J. Fjeldså, and P.G.P. Ericson (2006a), Evolution of the ovenbird-woodcreeper assemblage (Aves: Furnariidae) — major shifts in nest architecture and adaptive radiation J. Avian Biol. 37, 260-272.
- Irestedt, M., J.I. Ohlson, D. Zuccon, M. Källersjö, and P.G.P. Ericson (2006b), Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes), Zool. Scripta 35, 576-580.
- Irestedt, M., and J.I. Ohlson (2008), The division of the major songbird radiation into Passerida and ‘core Corvoidea’ (Aves: Passeriformes)—the species tree vs. gene trees, Zoologica Scripta 37, 305-313.
- Irestedt, M., J. Fuchs, K.A. Jønsson, J.I. Ohlson, E. Pasquet, and P.G.P. Ericson (2008), The systematic affinity of the enigmatic Lamprolia victoriae (Aves: Passeriformes)---an example of avian dispersal between New Guinea and Fiji over Miocene intermittent land bridges? Mol. Phylogenet. Evol. 48, 1218-1222.
- Irestedt, M., K.A. Jønsson, J. Fjeldså, L. Christidis, and P.G.P. Ericson (2009a), An unexpectedly long history of sexual selection in birds-of-paradise, BMC Evol. Biol. 9:235.
- Irestedt, M., J. Fjeldså, L. Dalen, and P.G.P. Ericson (2009b), Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae), BMC Evol. Biol. 9:268.
- Irwin, D.E., S. Bensch, and T.D. Price (2001), Speciation in a ring, Nature 409, 333-337.
- Irwin, D.E., S. Bensch, J.H. Irwin, and T.D. Price (2005), Speciation by Distance in a Ring Species, Science 307, 414-416.
- Isler, M.L., and P.R. Isler (1987), “The Tanagers” Smithsonian Institution, Washington, DC.
- Isler, M.L., P.R. Isler, and B.M. Whitney (2008), Species limits in Antbirds (Aves: Passeriformes: Thamnophilidae): an evaluation of Plumbeous Antvireo (Dysithamnus plumbeus) based on vocalizations , Zootaxa 1726, 60-68.
- James, H. F. (2004), The osteology and phylogeny of the Hawaiian finch radiation (Fringillidae: Drepanidini), including extinct taxa Zool. J. Linn. Soc. 141, 207-255.
- James, H.F., P.G.P. Ericson, B. Slikas, F-M. Lei, F.B. Gill and S. Olson (2003), Pseudopodoces humilis, a misclassified terrestrial tit (Paridae) of the Tibetan Plateau: Evolutionary consequences of shifting adaptive zones, Ibis 145, 185-202.
- Jaramillo, A. (2003), “Birds of Chile”, Princeton University Press, Princeton, NJ.
- Jehl, J.R., Jr. (1968), The Systematic Position of the Surfbird, Aphriza virgata, Condor 70, 200-210.
- Jesus, J., D. Menezes, S. Gomes, P. Oliveira, M. Nogales, and A. Brehm (2009), Phylogenetic relationships of gadfly petrels Pterodroma spp. from the Northeastern Atlantic Ocean: molecular evidence for specific status of Bugio and Cape Verde petrels and implications for conservation, Bird Conservation International 19, 199-214.
- Johansson, U.S. and P.G.P. Ericson (2003), Molecular support for a sister group relationship between Pici and Galbulae (Piciformes sensu Wetmore 1960), J. Avian Biol. 34, 185-197.
- Johansson, U.S., P. Alström, U. Olsson, P.G.P. Ericson, P. Sundberg, and T.D. Price (2007a), Build-Up of the Himalayan Avifauna through Immigration: A Biogeographical Analysis of the Phylloscopus and Seicercus Warblers, Evolution 61, 324-333.
- Johansson, U.S., J. Fjeldså, L.G.S. Lokugalappatti, and C.K. Bowie (2007b), A nuclear DNA phylogeny and proposed taxonomic revision of African greenbuls (Aves, Passeriformes, Pycnonotidae), Zoologica Scripta 36, 417-427.
- Johansson, U.S., R.C.K. Bowie, S.J. Hackett, and T.S. Schulenberg (2008a), The phylogenetic affinities of Crossley's babbler (Mystacornis crossleyi): adding a new niche to the vanga radiation of Madagascar, Biol. Lett. 4, 677-680.
- Johansson, U.S., J. Fjeldså, and C.K. Bowie (2008b), Phylogenetic relationships within Passerida (Aves: Passeriformes): A review and a new molecular phylogeny based on three nuclear intron markers Mol. Phylogenet. Evol. 48, 858-876.
- Johnson, K.P., and S.M. Lanyon (1999), Molecular systematics of the grackles and allies, and the effect of additional sequence (cyt b and ND2), Auk 116, 759-768.
- Johnson, K.P., and M.D. Sorenson (1999), Phylogeny and biogeography of dabbling ducks (genus: Anas): A comparison of molecular and morphological evidence, Auk 116, 792-805.
- Johnson, K.P., and D.H. Clayton (2000), Nuclear and Mitochondrial Genes Contain Similar Phylogenetic Signal for Pigeons and Doves (Aves: Columbiformes), Mol. Phylogenet. Evol. 14, 141-151.
- Johnson, K.P., S. de Kort, K. Dinwoodey, A.C. Mateman, C. ten Cate, C.M. Lessells, and D.H. Clayton (2001), A molecular phylogeny of the dove genera Streptopelia and Columba, Auk 118, 874-887.
- Johnson, N.K., and C. Cicero (2002), The role of ecologic diversification in sibling speciation of Empidonax flycatchers (Tyrannidae): multigene evidence from mtDNA, Mol. Ecol. 11, 2065-2081.
- Jønsson, K.A., and J. Fjeldså (2006), A phylogenetic supertree of oscine passerine birds (Aves: Passeri), Zoologica Scripta 35, 149-186.
- Jønsson, K.A., and J. Fjeldså (2006), Determining biogeographical patterns of dispersal and diversification in oscine passerine birds in Australia, Southeast Asia and Africa, J. Biogeogr. 33, 1155-1165.
- Jønsson, K.A., J. Fjeldså, P.G.P. Ericson, and M. Irestedt (2007), Systematic placement of an enigmatic Southeast Asian taxon Eupetes macrocerus and implications for the biogeography of a main songbird radiation, the Passerida, Biol. Lett. 3, 323-326.
- Jønsson, K.A., R.C.K. Bowie, J.A. Norman, L. Christidis, and J. Fjeldså (2008a), Polyphyletic origin of toxic Pitohui birds suggests widespread occurrence of toxicity in corvoid birds, Biol. Lett. 4, 71-74.
- Jønsson, K.A., M. Irestedt, J. Fuchs, P.G.P. Ericson, L. Christidis, R.C.K. Bowie, J.A. Norman, E. Pasquet, and J. Fjeldså (2008b), Explosive avian radiations and multi-directional dispersal across Wallacea: Evidence from the Campephagidae and other crown Corvida (Aves), Mol. Phylogenet. Evol. 47, 221-236.
- Jønsson, K.A., R.C.K. Bowie, R.G. Moyle, L. Christidis, J.A. Norman, B.W. Benz, and J. Fjeldså (2010a), Historical biogeography of an Indo-Pacific passerine bird family (Pachycephalidae): different colonization patterns in the Indonesian and Melanesian archipelagos, J. Biogeogr. 37, 245-257.
- Jønsson, K.A., M. Irestedt, P.G.P. Ericson, and J. Fjeldså (2010b), A molecular phylogeny of minivets (Passeriformes: Campephagidae: Pericrocotus): implications for biogeography and convergent plumage evolution, Zool. Scripta 39, 1-8.
- Joseph, L., T. Wilke, E. Bermingham, D. Alpers, and R. Ricklefs (2004), Towards a phylogenetic framework for the evolution of shakes, rattles, and rolls in Myiarchus tyrant-flycatchers (Aves: Passeriformes: Tyrannidae), Mol. Phylogenet. Evol. 31, 139-152.
- Jouventin, P., R.J. Cuthbert, and R. Ottvall (2006), Genetic isolation and divergence in sexual traits: evidence for the northern rockhopper penguin Eudyptes moseleyi being a sibling species, Mol. Ecol. 15, 3413-3423.
- Kaiser, V.B., M. van Tuinen, and H. Ellegren (2007), Insertion Events of CR1 Retrotransposable Elements Elucidate the Phylogenetic Branching Order in Galliform Birds, Mol. Biol. Evol. 24, 338-347.
- Kemp, A.C., and W. Delport (2002), Comments on the status of subspecies in the red-billed hornbill (Tockus erythrorhynchus) complex (Aves: Bucerotidae), with the description of a new taxon endemic to Tanzania, Ann. Transvaal Museum 39, 1-8.
- Kennedy, M., R.D. Gray and H.G. Spencer (2000), The phylogenetic relationships of the shags and cormorants: can sequence data resolve a disagreement between behavior and morphology? Mol. Phylogenet. Evol. 17, 345-359.
- Kennedy, M., S. Aspinall, and R.D.M. Page (2001), The phylogenetic position of the Socotra Cormorant Phalacrocorax nigrogularis: A near-endemic of the Arabian Gulf, Tribulus 11(2), 5-9.
- Kennedy, M. and R.D.M. Page (2002), Seabird supertrees: Combining partial estimates of Procellariiform phylogeny, Auk 119, 88-108.
- Kennedy, M., and H.G. Spencer (2004), Phylogenies of the Frigatebirds (Fregatidae) and Tropicbirds (Phaethonidae), two divergent groups of the traditional order Pelecaniformes, inferred from mitochondrial DNA sequences, Mol. Phylogenet. Evol. 31, 31-38.
- Kennedy, M., C.A. Valle, and H.G. Spencer (2009), The phylogenetic position of the Galapagos Cormorant Mol. Phylogenet. Evol. 53, 94-98.
- Kimball, R.T., E.L. Braun, J.D. Ligon, E. Randi, and V. Lucchini (2006), Using molecular phylogenetics to interpret evolutionary changes in morphology and behavior in the Phasianidae, Acta Zool. Sinica 52, S362-S365.
- Kimball, R.T., and E.L. Braun (2008), A multigene phylogeny of Galliformes supports a single origin of erectile ability in non-feathered facial traits, J. Avian Biol. 39, 438-445.
- Kimura, R.K., S.L. Pereira, E.T. Grau, E. Höfling, and A. Wajntal (2004), Genetic distances and phylogenetic analysis suggest that Baillonius Cassin, 1867 is a Pteroglossus Illiger, 1811 (Piciformes: Ramphastidae), Ornitologia Neotropical 15, 527-537.
- King, B.F. (2002), Species limits in the Brown Boobook Ninox scutulata complex, Bull. Brit. Ornith. Club 122, 250-257.
- Kirchman, J.J., S.J. Hackett, S.M. Goodman, and J.M. Bates (2001), Phylogeny and Systematics of Ground Rollers (Brachypteraciidae) of Madagascar, Auk 118, 849-863.
- Kirchman, J.J., C.C. Witt, J.A. McGuire, and G.R. Graves (2010), DNA from a 100-year-old holotype confirms the validity of a potentially extinct hummingbird species, Biol. Lett. 6, 112-115.
- Kirwan, G.M. (2008), Studies of Socotran birds III. Morphological and mensural evidence for a ‘new’ species in the Rufous Sparrow Passer motitensis complex endemic to the island of Abd 'Al-Kuri, with the validation of Passer insularis Sclater & Hartlaub, 1881, Bull. Brit. Ornith. Club 128, 83-93.
- Kirwan, G.M., and M.S. Gregory (2005), A new genus for the Mongolian Finch Bucanetes mongolicus (Swinhoe, 1870), Bull. Brit. Ornith. Club 125, 68-80.
- Kirwan, G.M., and A. Grieve (2007), Studies of Socotran birds II. One, two or three species: towards a rational taxonomy for the Golden-winged Grosbeak Rhynchostruthus socotranus, Bull. Afr. Bird Club 14, 159-169.
- Klein, N., K.J. Burns, S.J. Hackett, and C.S. Griffiths (2004), Molecular phylogenetic relationships among the wood warblers (Parulidae) and historical biogeography in the Caribbean basin, J. Carib. Ornith. (Special Issue) 17, 3-17.
- Klein, N., and W.M. Brown (1994), Intraspecific Molecular Phylogeny in the Yellow Warbler (Dendroica petechia), and Implications for Avian Biogeography in the West Indies, Evolution 48, 1914-1932.
- Klicka, J., R.M. Zink, J.C. Barlow, W.B. McGillivray, and T.J. Doyle (1999), Evidence supporting the recent origin and species status of the timberline sparrow, Condor 101, 577-588.
- Klicka, J., K.P. Johnson and S.M. Lanyon (2000), New world nine-primaried oscine relationships: Constructing a mitochondrial DNA framework, Auk 117, 321-336.
- Klicka, J., R.M. Zenk, and K. Winker (2003), Longspurs and snow buntings: Phylogeny and biogeography of a high-latitude clade (Calcarius), Mol. Phylogenet. Evol. 26, 165-175.
- Klicka, J., G. Voelker, and G.M. Spellman (2005), A molecular phylogenetic analysis of the “true thrushes” (Aves: Turdinae) Mol. Phylogenet. Evol. 34, 486-500.
- Klicka, J., K. Burns, and G.M. Spellman (2007), Defining a monophyletic Cardinalini: A molecular perspective, Mol. Phylogenet. Evol. 45, 1014-1032.
- Klicka, J. and G.M. Spellman (2007), A molecular evaluation of the North American “grassland” sparrow clade, Auk 124, 537-551.
- König, C., and F. Weick (2008), “Owls of the World”, 2nd ed., Christopher Helm, London.
- Krabbe, N., and C.D. Cadena (2010), A taxonomic revision of the Paramo Tapaculo Scytalopus canus Chapman (Aves: Rhinocryptidae), with description of a new subspecies from Ecuador and Peru, Zootaxa 2354, 55-66.
- Krajewski, C., and J.W. Fetzner Jr. (1994), Phylogeny of cranes (Gruiformes: Gruidae) based on cytochrome-b DNA sequences, Auk 111, 351-365.
- Krajewski, C. (1989), Phylogenetic relationships among cranes (Gruiformes: Gruidae) based on DNA hybridization, Auk 106, 603-618.
- Krajewski, C., J,T. Sipiorski, and F.E. Anderson (2010), Complete Mitochondrial Genome Sequences and the Phylogeny of Cranes (Gruiformes: Gruidae) Auk (forthcoming).
- Kriegs, J.O., A. Matzke, G. Churakov, A. Kuritzin, G. Mayr, J. Brosius, and J. Schmitz (2007), Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes), BMC Evol. Biol. 7:190.
- Kroodsma, D.E., and D. Brewer (2005), Family Troglodytidae (Wrens), in “Handbook of the Birds of the World, volume 10, Cuckoo-shrikes to Thrushes” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 356-447.
- Kulikova, I.V., Y.N. Zhuravlev, and K.G. McCracken (2004), Asymmetric hybridization and sex-biased gene flow between Eastern Spot-billed Ducks (Anas zonorhyncha) and Mallards (A. platyrhynchos) in the Russian Far East, Auk 121, 930-949.
- Kulikova, I.V., S.V. Drovetski, D.D. Gibson, R.J. Harrigan, S. Rohwer, M.D. Sorenson, K. Winker, Y.N. Zhuravlev, and K.G. McCracken (2005), Phylogeography of the mallard (Anas platyrhynchos): Hybridization, dispersal, and lineage sorting contribute to complex geographic structure, Auk 122, 949-965.
- Küpper, C., J. Augustin, A. Kosztolányi, T. Burke, J. Figuerola, and T. Székely (2009), Kentish versus Snowy Plover: Phenotypic and genetic analyses of Charadrius alexandrinus reveal divergence of Eurasian and American subspecies, Auk 126, 839-852.
- Kushlan, J.A., and J. Hancock (2005), “The Herons” Oxford University Press, Oxford.
- Kusmierski, R., G. Borgia, A. Uy, and R.H. Crozier (1997), Labile evolution of display traits in bowerbirds indicates reduced effects of phylogenetic constraint, Proc. Royal Soc. B 264, 307-313.
- Lanyon, S.M., and K.E. Omland (1999), A molecular phylogeny of the blackbirds (Icteridae): Five lineages revealed by cytochrome-b sequence data, Auk 116, 629-639.
- Lanyon, W.E. (1986), A Phylogeny of the Thirty-Three Genera in the Empidonax Assemblage of Tyrant Flycatchers, Amer. Mus. Novitates 2846.
- Larsen, C., M. Speed, N. Harvey, and H.A. Noyes (2007), A molecular phylogeny of the nightjars (Aves: Caprimulgidae) suggests extensive conservation of primitive morphological traits across multiple lineages, Mol. Phylogenet. Evol. 42, 789-796.
- LeCroy, M. and F.K. Barker (2006), A New Species of Bush-Warbler from Bougainville Island and a Monophyletic Origin for Southwest Pacific Cettia Amer. Mus. Novitates 3511.
- Leeton, P.R.J., L. Christidis, M. Westerman, and W.E. Boles (1994), Molecular Phylogenetic Affinities of the Night Parrot (Geopsittacus occidentalis) and the Ground Parrot (Pezoporus wallicus), Auk 111, 833-843.
- Lei, X., Z.-M. Lian, F.-M. Lei, Z.-H. Yin, and H.-F. Zhao (2007), Phylogeny of some Muscicapinae species based on cyt b mitochondrial gene sequences, Acta Zool. Sinica 53, 95-105.
- Leisler. B., P. Heidrich, K. Schulze-Hagen, and M. Wink (1997), Taxonomy and phylogeny of reed warblers (genus Acrocephalus) based on mtDNA sequences and morphology, J. Ornithol. 138, 470-496.
- Lerner, H.R.L., and D.P. Mindell (2005), Phylogeny of eagles, Old World vultures, and other Accipitridae based on nuclear and mitochondrial DNA, Mol. Phylogenet. Evol. 37, 327-346.
- Lerner, H.R.L., M.C. Llaver, and D.P. Mindell (2008), Molecular Phylogenetics of the Buteonine Birds of Prey (Accipitridae), Auk 304, 304-315.
- Liebers, A.J. Helbig, and D., P. de Knijff (2001), Genetic differentiation and phylogeography of gulls in the Larus cachinnans-fuscus group (Aves: Charadriiformes), Mol. Ecol. 10, 2447-2462.
- Liebers, D., and A.J. Helbig (2002), Phylogeography and colonization history of Lesser Black-backed Gulls (Larus fuscus) as revealed by mtDNA sequences, J. Evol. Biol. 15, 1021-1033.
- Liebers, D., P. de Knijff, and A.J. Helbig (2004), The herring gull complex is not a ring species, Proc. R. Soc. Lond. B 271, 893-901.
- Lijtmaer, D.A., N.M.M. Sharpe, P.L. Tubaro, and S.C. Lougheed (2004), Molecular phylogenetics and diversification of the genus Sporophila (Aves: Passeriformes), Mol. Phylogenet. Evol. 33, 562-579.
- Livezey, B.C. and R.L. Zusi (2007), Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion, Zool. J. Linn. Soc. 149, 1-95.
- Lougheed, S.C., J.R. Freeland, P. Handford, and P.T. Boag (2000), A molecular phylogeny of Warbling-Finches (Poospiza): Paraphyly in a neotropical emberizid genus, Mol. Phylogenet. Evol. 17, 367-378.
- Lovette, I.J. (2004), Molecular phylogeny and plumage signal evolution in a trans Andean and circum Amazonian avian species complex, Mol. Phylogenetic. Evol. 32, 512-523.
- Lovette, I.J. and E. Bermingham (1999), Explosive speciation in the New World Dendroica warblers, Proc. R. Soc. Lond. B 266, 1629-1636.
- Lovette, I.J. and E. Bermingham (2001), Mitochondrial perspective on the phylogenetic relationships of the Parula wood-warblers, Auk 118, 211-215.
- Lovette, I.J. and E. Bermingham (2002), What is a Wood-Warbler? Molecular characterization of a monophyletic Parulidae, Auk 119, 695-714.
- Lovette, I.J. and D.R. Rubenstein (2007), A comprehensive molecular phylogeny of the starlings (Aves: Sturnidae) and mockingbirds (Aves: Mimidae): Congruent mtDNA and nuclear trees for a cosmopolitan avian radiation, Mol. Phylogenet. Evol. 44, 1031-1056.
- Lovette, I.J., B.V. McCleery, A.L. Talaba, and D.R. Rubenstein (2008), A complete species-level molecular phylogeny for the “Eurasian” starlings (Sturnidae: Sturnus, Acridotheres, and allies): Recent diversification in a highly social and dispersive avian group, Mol. Phylogenet. Evol. 47, 251-260.
- Loynes, K., L. Joseph, and J.S. Keogh (2009), Multi-locus phylogeny clarifies the systematics of the Australo-Papuan robins (Family Petroicidae, Passeriformes), Mol. Phylogenet. Evol. 53, 212-219.
- Luo, X., Y.H. Qu, L.X. Han, S.H. Li, and F.M. Lei (2009), A phylogenetic analysis of laughingthrushes (Timaliidae: Garrulax) and allies based on mitochondrial and nuclear DNA sequences, Zoo. Scripta 38, 9-22.
- Maddison, D.R. and K.-S. Schulz (eds.) (2007), “The Tree of Life Web Project”, http://tolweb.org.
- Mann, N.F., F.K. Barker, J.A. Graves, K.A. Dingess-Mann, and P.J.B. Slater (2006), Molecular data delineate four genera of “Thryothorus” wrens, Mol. Phylogenet. Evol. 40, 750-759.
- Mariaux, J., and M.J. Braun (1996), A molecular phylogenetic survey of the nightjars and allies (Caprimulgiformes) with special emphasis on the potoos (Nyctibiidae), Mol. Phylogenet. Evol. 6, 228-244.
- Marks, B.D., J.D. Weckstein, and R.G. Moyle (2007), Molecular phylogenetics of the bee-eaters (Aves: Meropidae) based on nuclear and mitochondrial DNA sequence data, Mol. Phylogenet. Evol. 45, 23-32.
- Martens, J., Y.-H. Sun, and M. Päckert (2008), Intraspecific differentiation of Sino-Himalayan bush-dwelling Phylloscopus leaf warblers, with description of two new taxa (P. fuscatus, P. fuligiventer, P. affinis, P. armandii, P. subaffinis), Vertebrate Zool. 58, 233-265.
- Martínez Gómez, J.E., B.R. Barber, and A.T. Peterson (2005), Phylogenetic Position and Generic Placement of the Socorro Wren (Thryomanes sissonii), Auk 122, 50-56.
- Marthinsen, G., L. Wennerberg, and J.T. Lifjeld (2008), Low support for separate species within the redpoll complex (Carduelis flammea-hornemanni-cabaret) from analyses of mtDNA and microsatellite markers, Mol. Phylogenet. Evol. 47, 1005-1017.
- Mauck, W.M., III, and K.J. Burns (2009), Phylogeny, biogeography, and recurrent evolution of divergent bill types in the nectar-stealing flowerpiercers (Thraupini: Diglossa and Diglossopis) , Biol. J. Linn. Soc. 98, 14-28.
- Mauricio, G.N., H. Mata M.R. Bornschein, C.D. Cadena, H. Alvarenga, S.L. Bonatto (2008), Hidden generic diversity in Neotropical birds: molecular and anatomical data support a new genus for the “Scytalopus” indigoticus species-group (Aves: Rhinocryptidae), Mol. Phylogenet. Evol. 49, 125-135.
- Mayr, E., and J.M. Diamond (2001), “The Birds of Northern Melanesia: Speciation, Ecology, and Biogeography”, Oxford University Press, Oxford.
- Mayr, G. (2002), Osteological evidence for paraphyly of the avian order Caprimulgiformes (nightjars and allies), J. Ornithol. 143, 82-97.
- Mayr, G. (2008), Avian higher-level phylogeny: well-supported clades and what we can learn from a phylogenetic analysis of 2954 morphological characters, J. Zool. Syst. Evol. Res. 46, 63-72.
- McCormack, J.E., A.T. Peterson, E. Bonaccorso, and T.B. Smith (2008), Speciation in the highlands of Mexico: genetic and phenotypic divergence in the Mexican jay (Aphelocoma ultramarina), Mol. Ecol. 17, 2505-2521.
- McCracken, K.G., W.P. Johnson, and F.H. Sheldon (2001), Molecular population genetics, phylogeography, and conservation biology of the mottled duck (Anas fulvigula), Conservation Genetics 2, 87-102.
- McCracken, K.G., J. Harshman, D.A. McClellan, and A.D. Afton (1999), Data set incongruence and correlated character evolution: An example of functional convergence in the hind-limbs of stifftail diving ducks, Syst. Biol. 48, 638-714.
- McCracken, K.G., and M.D. Sorenson (2005), Is homoplasy or lineage sorting the source of incongruent mtdna and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)? Syst. Biol. 54, 35-55.
- McGuire, H.L. (2002), “Taxonomic Status of the Great White Heron (Ardea herodias occidentalis): An Analysis of Behavioral, Genetic, and Morphometric Evidence”, Florida Fish and Wildlife Conservation Commission, Tallahassee, FL.
- McGuire, J.A., C.W. Witt, D.L. Altshuler, and J.V. Remsen Jr. (2007), Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy, Syst. Biol. 56, 837-856.
- McKay, B.D., M.B.J. Reynolds, W.K. Hayes, and D.S. Lee (2010), Evidence for the Species Status of the Bahama Yellow-Throated Warbler (Dendroica “dominica” flavescens), Auk (forthcoming).
- McKitrick, M.C., (1985), Monophyly of the Tyrannidae (Aves): comparison of morphology and DNA, Syst. Zool. 34, 35-45.
- Melo, M., and J. Fuchs (2008), Phylogenetic relationships of the Gulf of Guinea Alcedo kingfishers, Ibis 150, 633-369.
- Meng, Y., B. Dai, J. Ran, J. Li, B. Yue (2008), Phylogenetic position of the genus Tetraophasis (Aves, Galliformes, Phasianidae) as inferred from mitochondrial and nuclear sequences, Biochem. Syst. Ecol. 36, 626-637.
- Meyer de Schauensee, R. (1966), “The species of birds of South America and their distributions”, Livingston Publishing Company, Narberth, PA.
- Milá, B., T.B. Smith, and R.K. Wayne (2007), Speciation and rapid phenotypic differentiation in the yellow-rumped warbler Dendroica coronata complex, Mol. Ecol. 16, 159-173.
- Miller, H.C., and D.M Lambert (2006), A molecular phylogeny of New Zealand's Petroica (Aves: Petroicidae) species based on mitochondrial DNA sequences, Mol. Phylogenet. Evol. 40, 844-855.
- Miller, M.J., E. Bermingham, and R.E. Ricklefs (2007), Historical Biogeography of the New World Solitaires (Myadestes spp.), Auk 124, 868-885.
- Miller, M.J., E. Bermingham, J. Klicka, P. Escalante, F.S.R. Amaral, J.T. Weir, and K. Winker (2008), Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher, Proc. R. Soc. B 275, 1133-1142.
- Miranda, H.C., R.S. Kennedy, and D.P. Mindell (1997), Phylogenetic placement of Mimizuku gurneyi (Aves: Strigidae) inferred from mitochondrial DNA, Auk 114, 315-323.
- Miyaki, C.Y., S.R. Matioli, T. Burke, and A. Wajntal (1998), Parrot Evolution and Paleogeographical Events: Mitochondrial DNA Evidence, Mol. Biol. Evol. 15, 544-551.
- Moore, W.S., A.C. Weibel, and A. Agius (2006), Mitochondrial DNA phylogeny of the woodpecker genus Veniliornis (Picidae, Picinae) and related genera implies convergent evolution of plumage patterns, Biol. J. Linnean Soc. 87, 611-624.
- Morgan-Richards, M., S.A. Trewick, A. Bartosch-Harlid, O. Kardialsky, M.J. Phillips, P.A. McLenachan, D. Penny (2008), Bird evolution: testing the metaves clade with six new mitochondrial genomes, BMC Evol. Biol. 8:20.
- Mourer-Chauviré, C., R. Bour, and S. Ribes (1995), Was the Solitaire of Réunion an Ibis? Nature 373, 568.
- Moyle, R. G. (2004), Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data, Mol. Phylogenet. Evol. 30, 187-200.
- Moyle, R.G. (2005), Phylogeny and biogeographical history of Trogoniformes, a pantropical bird order, Biol. J. Linnean Soc. 84, 725-738.
- Moyle, R.G., M. Schilthuizen, M.A. Rahman, and F.H. Sheldon (2005), Molecular phylogenetic analysis of the white-crowned forktail Enicurus leschenaulti in Borneo, J. Avian Biol. 36, 96-101.
- Moyle, R.G., and B.D. Marks (2006), Phylogenetic relationships of the bulbuls (Aves: Pycnonotidae) based on mitochondrial and nuclear DNA sequence data, Mol. Phylogenetic. Evol. 40, 687-695.
- Moyle, R.G., T. Chesser, R.O. Prum, P. Schikler and J. Cracraft (2006a), Phylogeny and Evolutionary History of Old World Suboscine Birds (Aves: Eurylaimides), Amer. Mus. Novitates 3544.
- Moyle, R.G., J. Cracraft, M. Lakim, J. Nais, and F.H. Sheldon (2006b), Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala), Mol. Phylogenet. Evol. 39, 893-898.
- Moyle, R.G., Fuchs, J., Pasquet, E., and Marks, B. (2007), Feeding behavior, toe count, and the phylogenetic relationships among alcedinine kingfishers, J. Avian Biol. 38, 317-326.
- Moyle, R.G., P.A. Hosner, J. Nais, M. Lakim, and F.H. Sheldon (2008), Taxonomic status of the Kinabalu 'linchi' swiftlet , Bull. Brit. Ornith. Club 128, 94-100.
- Moyle, R.G., C.E. Filardi, C.E. Smith, and J. Diamond (2009a), Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”, Proc. Natl. Acad. Sci. 106, 1863-1868.
- Moyle, R.G., R.T. Chesser, R.T. Brumfield, J.G. Tello, D.J. Marchese, and J. Cracraft (2009b), Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: infraorder Furnariides), Cladistics 25, 386-405.
- Navarro-Sigüenza, A.G., A.T. Peterson, E. López-Medrano and H. Benítez-Díaz (2001), Species limits in mesoamerican Aulacorhynchus toucanets, Wilson Bull. 113, 363-372.
- Navarro-Sigüenza, A.G., and A.T. Peterson (2004), An Alternative Species Taxonomy of the Birds of Mexico, Biota Neotropica 4(2).
- Navarro-Sigüenza, A.G., A.T. Peterson, A. Nyari, G.M. García-Deras, and J. García-Moreno (2008), Phylogeography of the Buarremonbrush-finch complex (Aves, Emberizidae) in Mesoamerica, Mol. Phylogenet. Evol. 47, 21-35.
- Nguembock, B., J. Fjeldså, A. Tillier, and E. Pasquet (2007), A phylogeny for the Cisticolidae (Aves: Passeriformes) based on nuclear and mitochondrial DNA sequence data, and a re-interpretation of a unique nest-building specialization, Mol. Phylogenet. Evol. 42, 272-286.
- Nguembock, B., J. Fjeldså, A. Couloux, C. Cruaud, and E. Pasquet (2008a), Polyphyly of the genus Apalis and a new generic name for the species pulchra and ruwenzorii, Ibis 150, 756-765.
- Nguembock, B., J. Fjeldså, C. Cruaud, and E. Pasquet (2008b), Molecular phylogenetic analysis of all members of the genus Elminia confirms their presence within the Stenostiridae clade, Zool. Scripta 37, 591-602.
- Nguembock, B., J. Fjeldså, A. Couloux, and E. Pasquet (2008c), Phylogeny of Laniarius: Molecular data reveal L. liberatus synonymous with L. erlangeri and “plumage coloration” as unreliable morphological characters for defining species and species groups, Mol. Phylogenet. Evol. 48, 396-407.
- Nguembock, B., J. Fjeldså, A. Couloux, and E. Pasquet (2009a), Molecular phylogeny of Carduelinae (Aves, Passeriformes, Fringillidae) proves polyphyletic origin of the genera Serinus and Carduelis and suggests redefined generic limits, Mol. Phylogenet. Evol. 51, 169-181.
- Nguembock, A. Cibois, R.C.K. Bowie, C. Cruaud, and E. Pasquet (2009b), Phylogeny and biogeography of the genus Illadopsis (Passeriformes: Timaliidae) reveal the complexity of diversification of some African taxa, J. Avian Biol. 40, 113-125.
- Nicholls, J.A., M.C. Double, D.M. Rowell and R.D. Magrath (2000), The evolution of cooperative and pair breeding in thornbills Acanthiza (Pardalotidae), J. Avian Biol. 31, 165-176.
- Nicholls, J.A. (2001), Molecular systematics of the thornbills Acanthiza. Emu 101, 33-37.
- Njabo, K.Y., R.C.K. Bowie, and M.D. Sorenson (2008), Phylogeny, biogeography and taxonomy of the African wattle-eyes (Aves: Passeriformes: Platysteiridae), Mol. Phylogenet. Evol. 48, 136-149.
- Njabo, K.Y., and M.D. Sorenson (2009), Origin of Bannerman's Turaco Tauraco bannermani in relation to historical climate change and the distribution of West African montane forests, Ostrich 80, 1-8.
- Norman, J.A., L. Christidis, L. Joseph, B. Slikas, and D. Alpers (2002), Unravelling a biogeographical knot: origin of the `leapfrog' distribution pattern of Australo-Papuan sooty owls (Strigiformes) and logrunners (Passeriformes), Proc. R. Soc. Lond. B 269, 2127-2133.
- Norman, J.A., F.E. Rheindt, D.L. Rowe, and L. Christidis (2007), Speciation dynamics in the Australo-Papuan Meliphaga honeyeaters, Mol. Phylogenet. Evol. 42, 80-91.
- Norman, J.A., P.G.P. Ericson, K.A. Jønsson, J. Fjeldså, and L. Christidis (2009a), A multi-gene phylogeny reveals novel relationships for aberrant genera of Australo-Papuan core Corvoidea and polyphyly of the Pachycephalidae and Psophodidae (Aves: Passeriformes), Mol. Phylogenet. Evol. 52, 488-497.
- Norman, J.A., W.E. Boles, and L. Christidis, L. (2009b) Relationships of the New Guinean songbird genera Amalocichla and Pachycare based on mitochondrial and nuclear DNA sequences, J. Avian Biol. 40, 640-645.
- Nunn, G.B. and S.E. Stanley (1998), Body size effects and rates of cytochrome b evolution in tube-nosed seabirds Mol. Biol. Evol. 15, 1360-1371; Corrigendum (2000) 17, 1774
- Nyári, A.S., B.W. Benz, K.A. Jønsson, J. Fjeldså, and R.G. Moyle (2009a), Phylogenetic relationships of fantails (Aves: Rhipiduridae), Zool. Scripta 38, 553-561.
- Nyári, A.S., A.T. Peterson, N.H. Rice, and R.G. Moyle (2009b), Phylogenetic Relationships of Flowerpecker (Aves: Diceaidae): Novel Insights into the Evolution of a Tropical Passerine Clade, Mol. Phylogenet. Evol. 53, 613-619.
- Ohlson, J. I., R. O. Prum, and P. G. P. Ericson (2007), A molecular phylogeny of the cotingas (Aves: Cotingidae), Mol. Phylogenet. Evol. 42, 25-37.
- Ohlson, J., J. Fjeldså, and P.G.P. Ericson (2008), Tyrant flycatchers coming out in the open: phylogeny and ecological radiation of Tyrannidae (Aves, Passeriformes), Zoo. Scripta 37, 315-335.
- Ohlson, J., J. Fjeldså, and P.G.P. Ericson (2009), A new genus for three species of tyrant flycatchers (Passeriformes: Tyrannidae), formerly placed in Myiophobus, Zootaxa 2291, 36-40.
- Oliveros, C.H. (2009), “Origin and Diversification of Philippine Bulbuls”, M.A. thesis, University of Kansas.
- Oliveros, C.H., and R.G. Moyle (2010), Origin and diversification of Philippine bulbuls, Mol. Phylogenet. Evol. 54, 822-832.
- Olson, S.L. (1990), Comments on the osteology and systematics of the New Zealand passerines of the genus Mohoua, Notornis 37, 157-160.
- Olson, S.L., M. Irestedt, P.G.P. Ericson, and J. Fjeldså (2005), Independent Evolution of Two Darwinian Marsh-Dwelling Ovenbirds (Furnariidae: Limnornis, Limnoctites), Ornitologia Neotropical 16, 347-359.
- Olsson, U., P. Alström, and P. Sundberg (2004), Non-monophyly of the avian genus Seicercus (Aves: Sylviidae) revealed by mitochondrial DNA, Zool. Scripta 33, 501-510.
- Olsson, U., P. Alström, P.G.P. Ericson, and P. Sundberg (2005), Non-monophyletic taxa and cryptic species — evidence from a molecular phylogeny of leaf-warblers (Phylloscopus, Aves) Mol. Phylogenet. Evol. 36, 261-276.
- Olsson, U., P. Alstrøm, M. Gelang, P.G.P. Ericson, and P. Sundberg (2006), Phylogeography of Indonesian and Sino-Himalayan region bush warblers (Cettia, Aves), Mol. Phylogenet. Evol. 41, 556-565.
- Omland, K.E., S.M. Lanyon, and S.J. Fritz (1999), A molecular phylogeny of the new world orioles (Icterus): the importance of dense taxon sampling, Mol. Phylogenet. Evol. 12, 224-239.
- Omland, K.E., C.L. Tarr, W.I. Boarman, J.M. Marzlu, and R.C. Fleischer (2000), Cryptic genetic variation and paraphyly in ravens, Proc. Royal Soc. B 267, 2475-2482.
- Omland, K.E., J.M. Baker, and J.L. Peters (2006), Genetic signatures of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax), Mol. Ecol. 15, 795-808.
- Orta, J. (1992), Family Phalacrocoracidae (Cormorants) in “Handbook of the Birds of the World, volume 1, Ostrich to Ducks” (del Hoyo, J., A. Elliott, and J. Sargatal, eds.), Lynx Edicions, Barcelona, pp. 326-353.
- Ottvall, R., S. Bensch, G. Walinder, and J.T. Lifjeld (2002), No evidence of genetic differentiation between lesser redpolls Carduelis flammea cabaret and common redpolls Carduelis f. flammea, Avian Sci. 2, 237-244.
- Outlaw, D.C., and G. Voelker (2006a), Systematics of Ficedula flycatchers (Muscicapidae): A molecular reassessment of a taxonomic enigma, Mol. Phylogenet. Evol. 42, 118-126.
- Outlaw, D.C., and G. Voelker (2006b), Phylogenetic tests of hypotheses for the evolution of avian migration: a case study using the Motacillidae, Auk 123, 455-466.
- Outlaw, R.K., G. Voelker, and D.C. Outlaw (2007), Molecular systematics and historical biogeography of the rock-thrushes (Muscicapidae: Monticola), Auk 124, 561-577.
- Outlaw, R.K., G. Voelker, and R.C.K. Bowie (2010), Shall we chat? Evolutionary relationships in the genus Cercomela (Muscicapidae) and its relation to Oenanthe reveals extensive polyphyly among chats distributed in Africa, India and the Palearctic, Mol. Phylogenet. Evol. (forthcoming).
- Overton, L.C., and D.D. Rhoads (2006), Molecular phylogenetic relationships of Xiphidiopicus percussus, Melanerpes, and Sphyrapicus (Aves: Picidae) based on cytochrome b sequence, Mol. Phylogenet. Evol. 41, 288-294.
- Päckert, M., J. Martens, and L.L. Severinghaus (2009), The Taiwan Firecrest (Regulus goodfellowi) belongs to the Goldcrest assemblage (Regulus regulus s.l.): evidence from mitochondrial DNA and the territorial song of the Regulidae, J. Ornith. 150, 205-220.
- Päckert, M., J. Martens, and Y.-H. Sun (2010), Phylogeny of long-tailed tits and allies inferred from mitochondrial and nuclear markers (Aves: Passeriformes, Aegithalidae), Mol. Phylogenet. Evol. (forthcoming).
- Pan, Q.-W., F.-M. Lei, S.-J. Yang, Z.-H. Yin, Y. Huang, F.-D. Tai, A. Kristin (2006), Phylogeny of some turdinae birds based on mitochondrial cytochrome b gene sequences, Acta Zool. Sinica 52, 87-98.
- Parchman, T.L., C.W. Benkman, and S.C. Britch (2006), Patterns of genetic variation in the adaptive radiation of New World crossbills (Aves: Loxia), Mol. Ecol. 15, 1873-1887.
- Parra, J.L., J.V. Remsen, M. Alvarez-Rebolledo, and J.A. McGuire (2009), Molecular phylogenetics of the hummingbird genus Coeligena, Mol. Phylogenet. Evol. 53, 425-434.
- Pasquet, E., A. Cibois, F. Baillon, and C. &Eaccute;rard (1999), Relationships between the ant-thrushes Neocossyphus and the flycatcher-thrushes Stizorhina and their position relative to Myadestes entomodestes and some other Turdidae (Passeriformes), J. Zool. Syst. Evol. Res. 37, 177-183.
- Pasquet, E., L.-X. Han, O. Khobkhet, and A. Cibois (2001), Towards a molecular systematics of the genus Criniger, and a preliminary phylogeny of the bulbuls (Aves, Passeriformes, Pycnonotidae), Zoosystema 23, 857-863.
- Pasquet, E., A. Cibois, F. Baillon, and C. &Eaccute;rard (2002), What are African monarchs (Aves, Passeriformes)? A phylogenetic analysis of mitochondrial genes, C. R. Biologies 325, 107-118.
- Pasquet, E., E. Bourdon, M.V. Kalyakin, and A. Cibois (2006), The fulvettas (Alcippe, Timaliidae, Aves): a polyphyletic group, Zool. Scripta 35, 559-566.
- Pasquet, E., J.-M. Pons, J. Fuchs, C. Cruaud, and V. Bretagnolle (2007), Evolutionary history and biogeography of the drongos (Dicruridae), a tropical Old World clade of corvoid passerines, Mol. Phylogenet. Evol. 45, 158-167.
- Patané, J.S.L., J.D. Weckstein, A. Aleixo, and J.M. Bates (2009), Evolutionary history of Ramphastos toucans: molecular phylogenetics, temporal diversification, and biogeography, Mol. Phylogenet. Evol. 53, 923-934.
- Paton, T.A., A.J. Baker, J.G. Groth, and G.F. Barrowclough (2003), RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds, Mol. Phylogenet. Evol. 29, 268-278.
- Paton, T.A., and A.J. Baker (2006), Sequences from 14 mitochondrial genes provide a well-supported phylogeny of the Charadriiform birds congruent with the nuclear RAG-1 tree, Mol. Phylogenet. Evol. 39, 657-667.
- Pavlova, A., R.M. Zink, S.V. Drovetski, Y. Red'kin, and S. Rohwer (2003), Phylogeographic patterns in Motacilla flava and Motacilla citreola: Species limits and population history, Auk 120, 744-758.
- Payne, R.B., and C.R. Barlow (2004), Songs of Mali Firefinch Lagonosticta virata and their mimicry by Barka Indigobird Vidua larvaticola in West Africa, Malimbus 26, 11-18.
- Payne, R.B. (2005), “The Cuckoos (Bird Families of the World 15)”, Oxford University Press, Oxford.
- Payne, R.B., and M.D. Sorenson (2005), Molecular systematics: Cuckoo phylogeny inferred from mitochondrial DNA sequences in “The Cuckoos”, pp.68-94 (R.B. Payne, ed.), Oxford University Press, Oxford.
- Penhallurick, J., and M. Wink (2004), Analysis of the taxonomy and nomenclature of the Procellariiformes based on complete nucleotide sequences of the mitochondrial cytochrom b gene, Emu 104, 125-147.
- Pereira, S.L. and A.J. Baker (2005), Multiple gene evidence for parallel evolution and retention of ancestral morphological states in the shanks (Charadriiformes: Scolopacidae), Condor 107, 514-526.
- Pereira, S.L. and A.J. Baker (2008), DNA evidence for a Paleocene origin of the Alcidae (Aves: Charadriiformes) in the Pacific and multiple dispersals across northern oceans, Mol. Phylogenet. Evol. 46, 430-445.
- Pereira, S.L., and Wajntal, A. (2008), The historical biogeography of Pteroglossus aracaris (Aves, Piciformes, Ramphastidae) based on Bayesian analysis of mitochondrial DNA sequences, Genet. Mol. Biol. 31, 964-973.
- Pereira, S.L., K.P. Johnson, D.H. Clayton, and A.J. Baker (2007), Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleogene, Systematic Biology 56, 656-672.
- Penhallurick, J. and M. Wink (2004), Analysis of the taxonomy and nomenclature of the Procellariiformes based on complete nucleotide sequences of the mitrochondrial cytochrome b gene, Emu 104, 125-147.
- Petren, K., P.R. Grant, B.R. Grant, and F. Keller (2005), Comparative landscape genetics and the adaptive radiation of Darwin's finches: the role of peripheral isolation, Mol. Ecol. 14, 2943-2957.
- Peters, J.L., K.G. McCracken, Y.N. Zhuravlev, Y. Lua, R.E. Wilson, K.P. Johnson, and K.E. Omland (2005), Phylogenetics of wigeons and allies (Anatidae: Anas): the importance of sampling multiple loci and multiple individuals, Mol. Phylogenet. Evol. 35, 209-224.
- Phillips, M.J., G.C. Gibb, E.A. Crimp, and D. Penny (2010), Tinamous and Moa Flock Together: Mitochondrial Genome Sequence Analysis Reveals Independent Losses of Flight among Ratites, Syst. Biol. 59, 90-107.
- Piacentini, V.d.Q., A. Aleixo, L.F. Silveira (2009), Hybrid, Subspecies, or Species? The Validity and Taxonomic Status of Phaethornis longuemareus aethopyga Zimmer, 1950 (Trochilidae) Auk 126, 604-612.
- Pitra, C., D. Lieckfeldt, S. Frahnert, and J. Fickel (2002), Phylogenetic Relationships and Ancestral Areas of the Bustards (Gruiformes: Otididae), Inferred from Mitochondrial DNA and Nuclear Intron Sequences, Mol. Phylogenet. Evol. 23, 63-74.
- Pittaway, R. (1999), Taxonomic History of Thayer's Gull, Ontario Birds 17, 1-13.
- Pointer, M.A., and N.I. Mundy (2008), Testing whether macroevolution follows microevolution: Are colour differences among swans (Cygnus) attributable to variation at the MC1R locus?, BMC Evol. Biol., 8, 249.
- Pons, J.-M., P.-A. Crochet, M. Thery, and A. Bermejo (2004), Geographical variation in the yellow-legged gull: introgression or convergence from the herring gull?, J. Zool. Syst. Evol. Res. 42, 245-256.
- Pons, J.-M., A. Hassanin, and P.-A. Crochet (2005), Phylogenetic relationships within the Laridae (Charadriiformes: Aves) inferred from mitochondrial markers, Mol. Phylogenet. Evol. 37, 686-699.
- Powell, A.F.L.A., F.K. Barker, and S.M. Lanyon (2008), A Complete Species-Level Phylogeny of the Grackles (Quiscalus spp.), Including the Extinct Slender-Billed Grackle, Inferred from Mitochondrial DNA, Condor 110, 718-728.
- Prager, M., E.I.A. Johansson, and S. Andersson (2008), A molecular phylogeny of the African widowbirds and bishops, Euplectes spp. (Aves: Passeridae: Ploceinae), Mol. Phylogenet. Evol. 46, 290-302.
- Pratt, H.D., (2001), Why the Hawai'i Creeper is an Oreomystis: What Phenotypic Characters Reveal about the Phylogeny of Hawaiian Honeycreepers, Studies Avian Biology 22, 81-97.
- Pratt, R.C., G.C. Gibb, M. Morgan-Richards, M.J. Phillips, M.D. Hendy, and D. Penny (2009), Towards resolving deep Neoaves phylogeny: data, signal enhancement and priors, Mol. Biol. Evol. 26, 313-326.
- Price, J.J., and S.M. Lanyon (2002a), A robust phylogeny of the oropendolas: Polyphyly revealed by mitochondrial sequence data, Auk 119, 335-348.
- Price, J.J., and S.M. Lanyon (2002b), Reconstructing the Evolution of Complex Bird Song in the Oropendolas, Evolution 56, 1514-1529.
- Price, J.J., and S.M. Lanyon (2004), Patterns of song evolution and sexual selection in the oropendolas and caciques, Behav. Ecol. 15, 485-497.
- Prum, R.O., and W.E. Lanyon (1989), Monophyly and phylogeny of the Schiffornis group (Tyrannoidea), Condor 91, 444-461.
- Puebla-Olivares, F., Bonaccorso, E., A. Espinosa de los Monteros, K. Omland, J.E. Llorente-Bousquets, A.T. Peterson, and A. Navarro-Sigüenza (2008), Speciation in the Emerald Toucanet (Aulacorhynchus prasinus) complex, Auk 125, 39-50.
- Peucker, A.J., P. Dann, and C.P. Burridge (2009), Range-wide phylogeography of the Little Penguin (Eudyptula minor): evidence of long-distance dispersal, Auk 126, 397-408.
- Qu, Y., P.G.P. Ericson, F. Lei, A. Gebauer, M. Kaiser, and A.J. Helbig (2006), Molecular phylogenetic relationship of snowfinch complex (genera Montifringilla, Pyrgilauda, and Onychostruthus) from the Tibetan plateau, Mol. Phylogenet. Evol. 40, 218-226.
- Rabosky, D.L., and I.J. Lovette (2008), Density-dependent diversification in North American wood warblers, Proc. Royal Soc. B 275, 2363-2371.
- Rasmussen, P.C. (1991), Relationships between Coastal South American King and Blue-Eyed Shags, Condor 93, 825-839.
- Rasmussen, P.C., and J.C. Anderton (2005), “Birds of South Asia: The Ripley Guide”, Smithsonian Institution, Washington DC.
- Reddy, S. and J. Cracraft (2007), Old World Shrike-babblers (Pteruthius) belong with New World Vireos (Vireonidae), Mol. Phylogenet. Evol. 44, 1352-1367.
- Reddy, S. (2008), Systematics and biogeography of the shrike-babblers (Pteruthius): Species limits, molecular phylogenetics, and diversification patterns across southern Asia, Mol. Phylogenet. Evol. 47, 54-72.
- Reding, D.M., J.T. Foster, H.F. James, H.D. Pratt, and R.C. Fleischer (2009), Convergent evolution of ‘creepers’ in the Hawaiian honeycreeper radiation, Biol. Lett. 5, 221-222.
- Remsen, J.V., Jr., C.D. Cadena, A. Jaramillo, M. Nores, J.F. Pacheco, M.B. Robbins, T.S. Schulenberg, F.G. Stiles, D.F. Stotz, and K.J. Zimmer (2008), (Version [28 May 2008]) “A classification of the bird species of South America”, American Ornithologists' Union.
- Rheindt, F.E., and J.J. Austin (2005), Major analytical and conceptual shortcomings in a recent revision of the Procellariiformes—A reply to Penhallurick and Wink (2004), Emu 105, 181-186.
- Rheindt, F.E., and Hutchinson (2007), A photoshot odyssey through the confused avian taxonomy of Seram and Buru (Southern Moluccas), Birding Asia 7, 18-38.
- Rheindt, F.E., J.A. Norman, and L. Christidis (2008a), Phylogenetic relationships of tyrant-flycatchers (Aves: Tyrannidae), with an emphasis on the elaeniine assemblage, Mol. Phylogenetic. Evol. 46, 88-101.
- Rheindt, F.E., L. Christidis, and J.A. Norman (2008b), Habitat shifts in the evolutionary history of a Neotropical flycatcher lineage from forest and open landscapes, BMC Evol. Biol. 8:193
- Rheindt, F.E., J.A. Norman, and L. Christidis (2008c), DNA evidence shows vocalizations to be a better indicator of taxonomic limits than plumage patterns in Zimmerius tyrant-flycatchers, Mol. Phylogenet. Evol. 48, 150-156.
- Rheindt, F.E., L. Christidis, and J.A. Norman (2009a), Genetic introgression, incomplete lineage sorting and faulty taxonomy create multiple cases of polyphyly in a montane clade of tyrant-flycatchers (Elaenia, Tyrannidae), Zool. Scripta 38, 134-153.
- Rheindt, F.E., L. Christidis, G.S. Cabanne, C. Miyaki, and J.A. Norman (2009b), The timing of Neotropical speciation dynamics: a reconstruction of Myiopagis flycatcher diversification using phylogenetic and paleogeographic data, Mol. Phylogenet. Evol. 53, 961-971.
- Rhymer, J. (2001), Evolutionary relationships and conservation of the Hawaiian anatids, Studies Avian Biology 22, 61-67.
- Ribas, C.C., and C.Y. Miyaki (2004), Molecular systematics in Aratinga parakeets: species limits and historical biogeography in the `solstitialis' group, and the systematic position of Nandayus nenday, Mol. Phylogenet. Evol. 30, 663-675.
- Ribas, C.C., R. Gaban-Lima, C.Y. Miyaki, and J. Cracraft (2005), Historical biogeography and diversification within the Neotropical parrot genus Pionopsitta (Aves: Psittacidae) J. Biogeogr. 32, 1409-1427.
- Ribas, C.C., L. Joseph, and C.R. Miyaki (2006), Molecular systematics and patterns of diversification in Pyrrhura (Psittacidae) with special reference to the picta-leucotis complex, Auk 123, 660-680.
- Ribas, C.C., R.G. Moyle, C.Y. Miyaki, and J. Cracraft (2007a), The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots, Proc. Royal Soc. B 274, 2399-2408.
- Ribas, C.C., E.S. Taveres, C. Yoshihara and C.Y. Miyaki (2007b), Phylogeny and biogeography of Yellow-headed and Blue-fronted Parrots (Amazona ochrocephala and Amazona aestiva) with special reference to the South American taxa, Ibis 149, 564-574.
- Ribas, C.C., C.Y. Miyaki and J. Cracraft (2009), Phylogenetic relationships, diversification and biogeography in Neotropical Brotogeris parakeets J. Biogeogr. 36, 1712-1729.
- Rice, N.H. (2005), Further evidence for paraphyly of the Formicariidae (Passeriformes), Condor 107, 910-915.
- Rice, N.H., A.T. Peterson, and G. Escalona-Segura (1999), Phylogenetic Patterns in Montane Troglodytes Wrens, Condor 101, 446-451.
- Rice, N.H., E. Martínez-Meyer, and A.T. Peterson (2003), Ecological niche differentiation in the Aphelocoma jays: a phylogenetic perspective, Biol. J. Linn. Soc. 80, 369-383.
- Ridgely, R.S., and P.J. Greenfield (2001), “The Birds of Ecuador” (2 vols), Cornell University Press, Ithaca, NY.
- Ridgely, R.S., and J.A. Gwynne (1989), “A Guide to the Birds of Panama” (2nd ed.), Princeton University Press, Princeton, NJ.
- Ridgely, R.S., and G. Tudor (1989), “The Birds of South America, I: The Oscine Passerines”, University of Texas Press, Austin, TX.
- Ridgely, R.S., and G. Tudor (1994), “The Birds of South America, II: The Suboscine Passerines”, University of Texas Press, Austin, TX.
- Riesing, M.J., L. Kruckenhauser, A. Gamauf, and E. Haring (2003), Molecular phylogeny of the genus Buteo (Aves: Accipitridae) based on mitochondrial marker sequences, Mol. Phylogenet. Evol. 27, 328-342.
- Ridgway, R. (1902), “The Birds of North and Middle America, part II”, Smithsonian Institution, Washington, DC.
- Roberson, Don (2008), “Bird Families of the World”, 8th ed., revised April 2008.
- Robertson, C.J.R., and G.B. Nunn (1998), Towards a new taxonomy for albatrosses, in “Albatross Biology and Conservation” (G. Robertson and R. Gales, eds.), Surrey Beatty and Sons, Chipping Norton.
- Roy, M.S., R. Sponer, and J. Fjeldså (2000), Molecular Systematics and Evolutionary History of Akalats (Genus Sheppardia): A Pre-Pleistocene Radiation in a Group of African Forest Birds, Mol. Phylogenet. Evol. 18, 74-83.
- Russello, M.A., and G. Amato (2004), A molecular phylogeny of Amazona: Implications for Neotropical parrot biogeography, taxonomy, and conservation, Mol. Phylogenet. Evol. 30, 421-437.
- Ryan, P.G., and P. Bloomer (1999), The Long-billed Lark complex: A species mosaic in southwestern Africa, Auk 116, 194-208.
- Ryan, P.G., I. Hood, P. Bloomer, J. Komen, and T.M. Crowe (1998), Barlow's Lark: a new species in the Karoo Lark Certhilauda albescens complex of southwest Africa, Ibis 140, 605-619.
- Ryan, P.G., P. Bloomer, C.L. Moloney, T.J. Grant, and W. Delport (2007), Ecological Speciation in South Atlantic Island Finches, Science 315, 1420-1423.
- Særte, G.-P., T. Borge, and T. Moum (2001), A new bird species? The taxonomic status of 'the Atlas Flycatcher' assessed from DNA sequence analysis, Ibis 143, 494-497.
- Sangster, G. (2009), Acoustic Differences Between the Scoters Melanitta nigra nigra and M. n. americana, Wilson J. Ornithol. 121, 696-702.
- Sangster, G. (2008a), A revision of Vermivora (Parulidae), with the description of a new genus, Bull. Brit. Ornith. Club 128, 207-211.
- Sangster, G. (2008b), A new genus for the waterthrushes (Parulidae), Bull. Brit. Ornith. Club 128, 212-214.
- Sanín, C., C.D.Cadena, J.M. Maley, D.A. Lijtmaer, P.L. Tubaro, and R.T, Chesser (2009), Paraphyly of Cinclodes fuscus (Aves: Passeriformes: Furnariidae): Implications for Taxonomy and Biogeography Mol. Phylogenet. Evol. 53, 547-555.
- Schmidt, B.K. J.T. Foster, G.R. Angehr, K.L. Durrant, R.C. Fleischer (2008), A new species of African Forest Robin from Gabon (Passeriformes: Muscicapidae: Stiphrornis), Zootaxa 1850, 27-42.
- Schuchmann, K.L. (1999), Trochilidae (Hummingbirds), in “Handbook of the Birds of the World, volume 5, Barn-owls to Hummingbirds” (del Hoyo, J., A. Elliott, and J. Sargatal, eds.), Lynx Edicions, Barcelona, pp. 468-680.
- Schweizer, M., M. Güntert, O. Seehausen, S.T. Hertwig (2010), The evolutionary diversification of parrots supports a taxon pulse model with multiple trans-oceanic dispersal events and local radiations, Mol. Phylogenet. Evol. 54, 984-994.
- Sedano, R.E., and K.J. Burns (2010), Are the Northern Andes a species pump for Neotropical birds? Phylogenetics and biogeography of a clade of Neotropical tanagers (Aves: Thraupini), J. Biogeogr. 37, 325-343.
- Sefc, K.M., R.B. Payne, and M.D. Sorenson (2003), Phylogenetic relationships of African sunbird-like warblers: Moho (Hypergerus atriceps), Green Hylia (Hylia prasina) and Tit-hylia (Pholidornis rushiae), Ostrich 74, 8-17.
- Seki, S.-I. (2006), The origin of the East Asian Erithacus robin, Erithacus komadori, inferred from cytochrome b sequence data, Mol. Phylogenet. Evol. 39, 899-905.
- Seutin, G., and E. Bermingham (1997), Rhodinocichla rosea Is an Emberizid (Aves; Passeriformes) Based on Mitochondrial DNA Analyses, Mol. Phylogenet. Evol. 8, 260-274.
- Shapiro, B., D. Sibthorpe, A. Rambaut, J. Austin, G.M. Wragg, O.R.P. Bininda-Emonds, P.L.M. Lee, and A. Cooper (2002), Flight of the Dodo, Science 295, 1683.
- Sheldon, F.H. (1987), Phylogeny of herons estimated from DNA-DNA hybridization data, Auk 104, 97-108.
- Sheldon, F.H.,, C.E. Jones, and K.G. McCracken (2000), Relative Patterns and Rates of Evolution in Heron Nuclear and Mitochondrial DNA, Mol. Biol. Evol. 17, 437-450.
- Sheldon, F.H., L.A. Whittingham, R.G. Moyle, B. Slikas, and D.W. Winkler (2005), Phylogeny of swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences, Mol. Phylogenet. Evol. 35, 254-270.
- Sheldon, F.H., D.J. Lohman, H.C. Lim, F. Zou, S.M. Goodman, D.M. Prawiradilaga, K. Winker, T.M. Braile, and R.G. Moyle (2009), Phylogeography of the magpie-robin species complex (Aves: Turdidae: Copsychus) reveals a Philippine species, an interesting isolating barrier and unusual dispersal patterns in the Indian Ocean and Southeast Asia, J. Biogeogr. 36, 1070-1083.
- Shepherd, L.D., and D.M. Lambert (2007), The relationships and origins of the New Zealand wattlebirds (Passeriformes, Callaeatidae) from DNA sequence analyses, Mol. Phylogenet. Evol. 43, 480-492.
- Shirihai, H., G. Gargallo, and A.J. Helbig (2001), “Sylvia warblers: identification, taxonomy and phylogeny of the genus Sylvia”, Princeton University Press, Princeton, NJ.
- Sibley, C.G., J.E. Ahlquist, and B.L. Monroe (1988), A classification of the living birds of the world based on DNA-DNA hybridization studies, Auk 105, 409-423.
- Sibley, C.G., and J.E. Ahlquist (1987), The Relationships of Four Species of New Zealand Passerine Birds, Emu 87, 63-67.
- Sibley, C.G., and J.E. Ahlquist (1985), The relationships of some groups of African birds, based on comparisons of the genetic material, DNA, in Proc. Symp. on African Vertebrates (K.-L. Schuchmann, ed.), pp. 115-161, Mus. A. Koenig, Bonn
- Sibley, C.G., and J.E. Ahlquist (1990), “Phylogeny and Classification of Birds”, Yale University Press, New Haven, CT.
- Sibley, C.G., and B.L. Monroe (1990), “Distribution and Taxonomy of the Birds of the World”, Yale University Press, New Haven, CT.
- Sibley, C.G., and B.L. Monroe (1993), “A World Checklist of Birds”, Yale University Press, New Haven, CT.
- Siegel-Causey, D. (1988), Phylogeny of the Phalacrocoracidae, Condor 90, 885-905.
- Siegel-Causey, D., and C. Lefevre (1989), Holocene Records of the Antarctic Shag (Phalacrocorax [Notocarbo] bransfieldensis) in Fuegian Waters, Condor 91, 408-415.
- Simmons, R.E. (2000), “Harriers of the world: their behaviour and ecology”, Oxford University Press, Oxford.
- Sinclair, I., and O. Langrand (2003), “Birds of the Indian Ocean Islands: Madagascar, Mauritius, Réunion, Rodrigues, Seychelles and the Comoros”, Struik Publishers, Cape Town.
- Sinclair, I., and P. Ryan (2003), “Birds of Africa South of the Sahara”, Struik Publishers, Cape Town.
- Slack, K.E., F. Delsuc, P.A. Mcclenachan, U. Arnason, and D. Penny (2007), Resolving the root of the avian mitogenic tree by breaking up long branches, Mol. Phylogenet. Evol. 42, 1-13.
- Slikas, B. (1997), Phylogeny of the Avian Family Ciconiidae (Storks) Based on Cytochrome b Sequences and DNA-DNA Hybridization Distances, Mol. Phylogenet. Evol. 8, 275-300.
- Slikas, B., S.L. Olson, and R.C. Fleischer (2002), Rapid, independent evolution of flightlessness in four species of Pacific Island rails (Rallidae): an analysis based on mitochondrial sequence data, J. Avian Biol. 33, 5-14.
- Smith, A.L., and V.L. Friesen (2007), Differentiation of sympatric populations of the band-rumped storm-petrel in the Galapagos Islands: an examination of genetics, morphology, and vocalizations, Mol. Ecol. 16, 1593-1603.
- Smith, A.L., L. Monteiro, O. Hasegawa, and V.L. Friesen (2007), Global phylogeography of the band-rumped storm-petrel (Oceanodroma castro; Procellariiformes: Hydrobatidae), Mol. Phylogenet. Evol. 43, 755-773.
- Song, G., Y. Qu, Z. Yin, S. Li, N. Liu, and F. Lei (2009), Phylogeography of the Alcippe morrisonia (Aves: Timaliidae): long population history beyond late Pleistocene glaciations, BMC Evol. Biol. 9:143.
- Sorenson, M.D., and R.B. Payne (2001), A Single Ancient Origin of Brood Parasitism in African Finches: Implications for Host-Parasite Coevolution, Evolution 55, 2550-2567.
- Sorenson, M., A. Cooper, E.E. Paxinos, T.W. Quinn, H.F. James, S.L. Olson, and R.C. Fleischer (1999), Relationships of the extinct moa-nalos, Flightless Hawaiian waterfowl, based on ancient DNA, Proc. Royal Soc. B 266, 2187-2193.
- Sorenson, M. D., C.N. Balakrishnan, and R.B. Payne (2004), Clade-limited colonization in brood parasitic Finches (Vidua spp.). Syst. Biol. 53, 140-153.
- Spellman, G.M., A. Cibois, R.G. Moyle, K. Winker, and F.K. Barker (2008), Clarifying the systematics of an enigmatic avian lineage: What is a Bombycillid? Mol. Phylogenet. Evol. 49, 1036-1040.
- Spicer, G.S., and L. Dunipace (2004), Molecular phylogeny of songbirds (Passeriformes) inferred from mitochondrial 16S ribosomal RNA gene sequences, Mol. Phylogenet. Evol. 30, 386-394.
- Springer, M.S., H. Hiroyoshi, U. Keisuke, M. Jason, C.G. Sibley (1995), Molecular evidence that the Bonin Islands “Honeyeater” is a white-eye, J. Yamashina Inst. Ornith. 27, 66-77.
- Sraml, M., L. Christidis, S. Easteal, P. Horn, and C. Collet (1996), Molecular relationships within Australasian waterfowl (Anseriformes), Australian J. Zool. 44, 47-58.
- St. John, J., J.P. Cotter, and T.W. Quinn (2005), A recent chicken repeat 1 retrotransposition confirms the Coscoroba-Cape Barren Goose clade, Mol. Phylogenet. Evol. 37, 83-90.
- Steeves, T.E., R.N. Holdaway, M.L. Hale, E. McLay, I.A.W. McAllan, M. Christian, M.E. Hauber, and M. Bunce (2010), Merging ancient and modern DNA: extinct seabird taxon rediscovered in the North Tasman Sea, Biol. Lett. 6, 94-97.
- Stevenson, H.M., and B.H. Anderson (1994), “The Birdlife of Florida”, University Press of Florida, Gainesville, FL.
- Stiles, F.G., and A. Skutch (1989), “A guide to the birds of Costa Rica”, Cornell University Press, Ithaca, NY.
- Storer, R.W. (1970), Subfamily Thraupinae, in “Check-list of birds of the World, Vol. 13” (Paynter R.A., Jr., ed.), Museum of Comparative Zoology, Cambridge, MA, pp. 246-408.
- Straneck, R. (2007), Una nueva especie de Serpophaga (Aves: Tyrannidae), Revista FAVE -- Sección Ciencias Veterinarias 6, 31-42.
- Sturge, R.J., F. Jacobsen, B.B. Rosensteel, R.J. Neale, and K.J. Omland (2009), Colonization of South America from Caribbean Islands Confirmed by Molecular Phylogeny with Increased Taxon Sampling, Condor 111, 575-579.
- Tavares, E.S., A.J. Baker, S.L. Pereira, and C.Y. Miyaki (2006), Phylogenetic Relationships and Historical Biogeography of Neotropical Parrots (Psittaciformes: Psittacidae: Arini) Inferred from Mitochondrial and Nuclear DNA Sequences, Syst. Biol. 55, 454-470.
- Techow, N.M.S.M., P.G. Ryan, and C. O'Ryan (2009), Phylogeography and taxonomy of White-chinned and Spectacled Petrels, Mol. Phylogenet. Evol. 52, 25-33.
- Tello, J.G., and J.M. Bates (2007), Molecular phylogenetics of the tody-tyrant and flatbill assemblage of tyrant flycatchers (Tyrannidae), Auk 124, 134-154.
- Tello, J.G., R.G. Moyle, D.J. Marchese and J. Cracraft (2009), Phylogeny and phylogenetic classification of the tyrant flycatchers, cotingas, manakins, and their allies (Aves: Tyrannides), Cladistics 25, 429-467.
- Thomas, G.H., M.A. Wills, and T. Szekély (2004a), Phylogeny of shorebirds, gulls, and alcids (Aves: Charadrii) from the cytochrome-b gene: parsimony, Bayesian inference, minimum evolution, and quartet puzzling, Mol. Phylogenet. Evol. 30, 516-526.
- Thomas, G.H., M.A. Wills, and T. Szekély (2004b), A supertree approach to shorebird phylogeny, BMC Evol. Biol. 4:28.
- Tieleman, B.I., J.B. Williams, and P. Bloomer (2003), Adaptation of metabolism and evaporative water loss along an aridity gradient, Proc. Royal Soc. London B 270, 207-214.
- Toews, D.P.L., and D.E. Irwin (2008), Cryptic speciation in a Holarctic passerine revealed by genetic and bioacoustic analyses, Mol. Ecol. 17, 2691-2705.
- Tonnis, B., P.R. Grant, B.R. Grant, and K. Petren (2005), Habitat selection and ecological speciation in Galapagos warbler finches (Certhidea olivacea and Certhidea fusca), Proc. Royal Soc. London B 272, 819-826.
- Treplin, S., R. Siegert, C. Bleidorn, H.S. Thompson, R. Fotso, and R. Tiedemann (2008), Molecular phylogeny of songbirds (Aves: Passeriformes) and the relative utility of common nuclear marker loci, Cladistics 24, 328-349.
- van Balen, S. (2008), Family Zosteropidae (White-eyes) in “Handbook of the Birds of the World, volume 13, Penduline-tits to Shrikes” (del Hoyo, J., A. Elliott, and D. Christie, eds.), Lynx Edicions, Barcelona, pp. 402-485.
- van Steenis, J.H. (2008), Galerida galore — speciation in 'crested larks', Dutch Birding 30, 238-239.
- VanderWerf, E.A. (2007), Biogeography of elepaio: evidence from inter-island song playbacks, Wilson J. Ornithol. 119, 325-333.
- VanderWerf, E.A., L.C. Young, N.W. Yeung, and D.B. Carlon (2010), Stepping stone speciation in Hawaii's flycatchers: molecular divergence supports new island endemics within the elepaio, Conserv. Genet. (forthcoming).
- Vázquez-Miranda, H., A.G. Navarro-Sigüenza, and K.E. Omland (2009), Phylogeography of the Rufous-naped Wren (Campylorhynchus rufinucha): Speciation and Hybridization in Mesoamerica, Auk 126, 765-778.
- Veron, G., and B.J. Winney (2000), Phylogenetic relationships within the turacos (Musophagidae), Ibis 142, 446-456.
- Voelker, G. (1999), Molecular evolutionary relationships in the avian genus Anthus (Pipits: Motacillidae), Mol. Phylogenet. Evol. 11, 84-94.
- Voelker, G., and J. Klicka (2008), Systematics of Zoothera thrushes, and a synthesis of True Thrush molecular systematic relationships, Mol. Phylogenet. Evol. 49, 377-381.
- Voelker, G., and R.K. Outlaw (2008), Establishing a perimeter position: speciation around the Indian Ocean Basin, J. Evol. Biol., 21, 1779-1788.
- Voelker, G., and G.M. Spellman (2004), Nuclear and mitochondrial DNA evidence of polyphyly in the avian superfamily Muscicapoidea, Mol. Phylogenet. Evol. 30, 386-394.
- Voelker, G., S. Rohwer, R.C.K. Bowie, and D.C. Outlaw (2007), Molecular systematics of a speciose, cosmopolitan songbird genus: Defining the limits of, and relationships among, the Turdus thrushes Mol. Phylogenet. Evol. 42, 422-434.
- Voelker, G., M. Melo, and R.C.K. Bowie (2009), A Gulf of Guinea island endemic is a member of a Mediterranean-centred bird genus Ibis 151, 580-583.
- Voelker, G., R.K. Outlaw, and R.C.K. Bowie (2010a), Pliocene forest dynamics as a primary driver of African bird speciation Global Ecol. Biogeogr. 19, 111-121.
- Voelker, G., R. Outlaw, S. Reddy, M. Tobler, and J. Bates (2010b), A New Species of Boubou from the Albertine Rift (Laniidae: Laniarius), Auk (forthcoming).
- Webb, M.W., and W.S. Moore (2005), A phylogenetic analysis of woodpeckers and their allies using 12S, Cyt b, and COI nucleotide sequences (class Aves; order Piciformes), Mol. Phylogenet. Evol. 36, 233-248.
- Weckstein, J.D. (2004), Biogeography Explains Cophylogenetic Patterns in Toucan Chewing Lice, Syst. Biol. 53, 154-164.
- Weckstein, J.D. (2005), Molecular Phylogenetics of the Ramphastos Toucans: Implications for the Evolution of Morphology, Vocalizations, and Coloration, Auk 122, 1191-1209.
- Weibel, A.C. and W.S. Moore (2002), Molecular Phylogeny of a Cosmopolitan Group of Woodpeckers (Genus Picoides) Based on COI and cyt b Mitochondrial Gene Sequences, Mol. Phylogenet. Evol. 22, 65-75.
- Weibel, A.C. and W.S. Moore (2002), A Test of a Mitochondrial Gene-Based Phylogeny of Woodpeckers (Genus Picoides) Using an Independent Nuclear Gene, β-Fibrinogen Intron 7, Mol. Phylogenet. Evol. 22, 247-257.
- Weir, D.N., A.C. Kitchener, and R.Y. McGowan (2000), Hybridization and changes in the distribution of Iceland gulls (Larus glaucoides/kumlieni/thayeri), J. Zool., Lond. 252, 517-530.
- Weir, J.T., E. Bermingham, M.J. Miller, J. Klicka, and M.A. González (2008), Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus), Mol. Phylogenet. Evol. 47, 650-664.
- Whittingham, L., T.M. Frederick, F.H. Sheldon, and S.T. Emlen (2000), Molecular phylogeny of Jacanas and its implications for morphologic and biogeographic evolution, Auk 117, 22-32.
- Whittingham, L., B. Slikas, D.W. Winkler, and F.H. Sheldon (2002), Phylogeny of the Tree Swallow Genus, Tachycineta (Aves: Hirundinidae), by Bayesian Analysis of Mitochondrial DNA Sequences, Mol. Phylogenet. Evol. 22, 430-441.
- Wink, M., and P. Heidrich (1999), Molecular evolution and systematics of the owls (Strigiformes), in “Owls: A Guide to Owls of the World” (König, C., F. Weick, and J.-H. Becking), Yale University Press, New Haven, CT, pp. 39-57.
- Wink, M., H. Sauer-Gürth, and E. Gwinner (2002), Evolutionary relationships of stonechats and related species inferred from mitochondrial-DNA sequences and genomic fingerprinting, Brit. Birds 95, 349-355.
- Wink, M., and H. Sauer-Gürth (2004), Phylogenetic Relationships in Diurnal Raptors based on nucleotide sequences of mitochondrial and nuclear marker genes in “Raptors Worldwide” (Chancelor, R.D. and B.-U. Meyburg, eds), WWBGP, Berlin.
- Wink, M., H. Sauer-Gürth, D. Ellis, and R. Kenward (2004a), Phylogenetic Relationships in the Hierofalco complex (Saker-, Gyr-, Lanner-, Lagger Falcon) in “Raptors Worldwide” (Chancelor, R.D. and B.-U. Meyburg, eds), WWBGP, Berlin.
- Wink, M., H. Sauer-Gürth, and M. Fuchs (2004b), Phylogenetic Relationships in Owls based on nucleotide sequences of mitochondrial and nuclear marker genes in “Raptors Worldwide” (Chancelor, R.D. and B.-U. Meyburg, eds), WWBGP, Berlin.
- Wink, M., P. Heidrich, H. Sauer-Gürth, A.-A. Elsayed, and J. Gonzalez (2008), Molecular Phylogeny and Systematics of Owls (Strigiformes), in “Owls: A Guide to Owls of the World”, 2nd ed., (König, C., and F. Weick), Christopher Helm, London.
- \by Winkler, H., D.A. Christie, and D. Nurney (1995), “Woodpeckers: An Identification Guide to the Woodpeckers of the World”, Houghton Mifflin Company, Boston.
- Winkler, H., N. Kotaka, A. Gamauf, F. Nittinger, and E. Haring (2005), On the phylogenetic position of the Okinawa woodpecker (Sapheopiponoguchii). J. Ornithol. 146, 103-110.
- Witt, C.C. (2004), “Rates of Molecular Evolution and their Application to Neotropical Avian Biogeography”, Ph.D. dissertation, Louisiana State University.
- Wolters, H.E. (1977), “Die Vogelarten der Erde”, vol. 3, Paul Parey, Hamburg and Berlin.
- Woog, F., M. Wink, E. Rastegar-Pouyani, J. Gonzalez, and B. Helm (2008), Distinct taxonomic position of the Madagascar stonechat (Saxicola torquatus sibilla) revealed by nucleotide sequences of mitochondrial DNA, J. Ornithtol. 149, 423-430.
- Worthy, T.H., and S.L. Olson (2002), Relationships, adaptations, and habits of the extinct duck 'Euryanas' finschi, Notornis 49, 1-17.
- Worthy, T.H., C.M. Miskelly, R.A. Ching (2002), Taxonomy of North and South Island snipe (Aves: Scolopacidae: {\it Coenocorypha\/}), with analysis of a remarkable collection of snipe bones from Greymouth, New Zealand, New Zealand J. Zool. 29, 231-244.
- Woxvold, I.A., J.W. Duckworth, and R.J. Timmins (2009), An unusual new bulbul (Passeriformes: Pycnonotidae) from the limestone karst of Lao PDR Forktail 25, 1-12.
- Wright, T.F., E.E. Schirtzinger, T. Matsumoto, J.R. Eberhard, G.R. Graves, J.J. Sanchez, S. Capelli, H. Müller, J. Scharpegge, G.K. Chambers, and R.C. Fleischer (2008), A Multilocus Molecular Phylogeny of the Parrots (Psittaciformes): Support for a Gondwanan Origin during the Cretaceous, Mol. Bio. Evol. 25, 2141-2156.
- Yamagishi, S., M. Honda, K. Eguchi, R. Thorstrom (2001), Extreme Endemic Radiation of the Malagasy Vangas (Aves: Passeriformes), J. Mol. Evol. 53, 39-46.
- Yuri, T. and D.P. Mindell (2002), Molecular phylogenetic analysis of Fringillidae, “New World nine-primaried oscines” (Aves: Passeriformes), Mol. Phylogenet. Evol. 23, 229-243.
- Zamora, J., E. Lowy, V. Ruiz-del-Valle, J. Moscoso, J.I. Serrano-Vela, J. Rivero-de-Aguilar, and A. Arnaiz-Villena (2006), Rhodopechys obsoleta (desert finch): a pale ancestor of greenfinches (Carduelis spp.) according to molecular phylogeny, J. Ornithol. 147, 448-456.
- Zhang, S., L. Yang, X. Yang, and J. Yang (2007), Molecular phylogeny of the yuhinas (Sylviidae: Yuhina): a paraphyletic group of babblers including Zosterops and Philippine Stachyris, J. Ornithol. 148, 417-426.
- Zimmer, R., B. Erdtmann, W.K. Thomas, and T.W. Quinn (1994), Phylogenetic analysis of the Cosoroba coscoroba using mitochondrial srRNA gene sequences, Mol. Phylogenet. Evol. 3, 85-91.
- Zink, R.M., and J.C. Avise (1990), Patterns of Mitochondrial DNA and Allozyme Evolution in the Avian Genus Ammodramus, Syst. Zool. 39, 148-161.
- Zink, R.M., and R.C. Blackwell (1996), Patterns of allozyme, mitochondrial DNA, and morphometric variation in four sparrow genera, Auk 113, 59-67.
- Zink, R.M., and D.L. Dittman (1993), Population structure and gene flow in the Chipping Sparrow and a hypothesis for evolution in the genus Spizella, Wilson Bull. 105, 399-413.
- Zink, R.M., D.L. Dittman, and W.L. Rootes (1991), Mitochondrial DNA variation and the phylogeny of Zonotrichia, Auk 108, 578-584.
- Zink, R.M., S.J. Weller, and R.C. Blackwell (1998), Molecular Phylogenetics of the Avian Genus Pipilo and a Biogeographic Argument for Taxonomic Uncertainty, Mol. Phylogenet. Evol. 10, 191-201.
- Zink, R.M., D.L. Dittmann, J. Klicka, and R.C. Blackwell-Rago (1999), Evolutionary Patterns of Morphometrics, Allozymes, and Mitochondrial DNA in Thrashers (Genus Toxostoma), Auk 116, 1021-1038.
- Zink, R.M., A. Pavlova, S. Drovetski, M. Wink, and S. Rohwer (2009), Taxonomic status and evolutionary history of the Saxicola torquata complex, Mol. Phylogenet. Evol. 52, 769-773.
- Zou, F., H.C. Lim, B.D. Marks, R.G. Moyle, and F.H. Sheldon (2007), Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: A case of remarkable genetic divergence in a “species”, Mol. Phylogenet. Evol. 44, 165-174.
- Zuccon, D., A. Cibois, E. Pasquet, and P.G.P. Ericson (2006), Nuclear and mitochondrial sequence data reveal the major lineages of starlings, mynas and related taxa, Mol. Phylogenet. Evol. 41, 333-344.
- Zuccon, D., E. Pasquet, and P.G.P. Ericson (2008), Phylogenetic relationships among Palearctic-Oriental starlings and mynas (genera Sturnus and Acridotheres: Sturnidae) Zool. Scripta 37, 469-481.
- Zuccon, D., and P.G.P. Ericson (2010a), The Monticola Rock-Thrushes: Phylogeny and biogeography revisited, Mol. Phylogenet. Evol. (forthcoming).
- Zuccon, D., and P.G.P. Ericson (2010b), The phylogenetic position of the Black-collared Bulbul Neolestes torquatus, Ibis (forthcoming).
- Zuccon, D., and P.G.P. Ericson (2010c), A multi-gene phylogeny disentangles the chat-flycatcher complex (Aves: Muscicapidae), Zool. Scripta (forthcoming).
- Zwiers, P.B., G. Borgia, and R.C. Fleischer (2008), Plumage based classification of the bowerbird genus Sericulus evaluated using a multi-gene, multi-genome analysis, Mol. Phylogenet. Evol. 46, 923-931.